TE analysis report

Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

• 2 725 unique TE insertions, which amount to a total of 4 885 occurrences among all samples.
• With any insertion appearing on 1.8 ± 0.41 samples (median of 2 occurrences/insertion).
• The average insertion count per case is 2 442.5 ± 224.2.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

• 2 106 TE insertions.
• A total of 3 859 calls across cases.
• A mean prevalence of 1.8 ± 0.37.
• The median prevalence is 2.
• Each sample carries an average of 1 929.5 ± 108.2 TE insertions.

1.2 Genotyping

• 99 unique insertions that passed the stringent filtering. (4.7% of the total unique insertions), had at least one occurrence genotyped as 0/0.

• These amount to 106 total count (2.7% of filter-passing occurrences).

• 51 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 58 insertion counts.

• Of these fully wrong calls, 44 were only found on a single patient each (86.3% of the 51).

• The strict criteria missed calls for 104 unique insertions (4.9%).

• These mean a total of 104 occurrences, out of 3 859 calls that passed the stringent filter.

• 104 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion	Unique INS with false positives (%)	Total false positives (%)	Unique INS (total) with all false positives	Unique INS with false negatives (%)	Total false negatives (Total positives)	Unique INS with more false negatives than positives
Strict	99 (4.7)	106 (2.7)	51 (58)	104 (4.9)	104 (3 859)	104
Lax	244 (9.0)	260 (5.3)	169 (185)	0 (0.0)	0 (4 885)	0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

564 TE insertions were found on all cases in homozygosis.

Click to show table with 564 rows.

Position	Length	Type	AF
CP068277.2:7 919 418	309	SINE (AluYa5)	1
CP068277.2:17 172 541	320	SINE (AluYe5)	1
CP068277.2:20 992 774	316	SINE (AluYa5)	1
CP068277.2:23 830 977	77	Retroposon (SVA_F)	1
CP068277.2:28 942 968	324	SINE (AluYg6)	1
CP068277.2:38 352 287	74	SINE (FRAM)	1
CP068277.2:46 090 578	333	SINE (AluYb8)	1
CP068277.2:48 071 786	132	Retroposon (SVA_A)	1
CP068277.2:59 284 566	318	SINE (AluYa5)	1
CP068277.2:65 547 882	322	SINE (AluY)	1
CP068277.2:76 472 686	281	SINE (AluYa5)	1
CP068277.2:78 954 901	306	SINE (AluYb9)	1
CP068277.2:79 721 146	38	LTR (THE1D-int)	1
CP068277.2:99 356 764	110	Retroposon (SVA_A)	1
CP068277.2:111 310 370	61	LINE (L1P2)	1
CP068277.2:111 595 921	319	SINE (AluYa5)	1
CP068277.2:117 439 865	79	Retroposon (SVA_F)	1
CP068277.2:118 551 299	320	SINE (AluYa5)	1
CP068277.2:147 616 749	173	LINE (L1P1)	1
CP068277.2:147 621 768	315	SINE (AluYa5)	1
CP068277.2:149 352 606	291	SINE (AluYb8)	1
CP068277.2:158 899 112	27	LINE (L1P)	1
CP068277.2:165 036 498	272	SINE (AluYa5)	1
CP068277.2:178 395 729	46	Retroposon (SVA_F)	1
CP068277.2:181 662 904	47	Retroposon (SVA_F)	1
CP068277.2:192 243 097	40	LTR (LTR12D)	1
CP068277.2:209 987 115	121	SINE (AluSz6)	1
CP068277.2:210 459 290	89	SINE (AluJb)	1
CP068277.2:216 985 245	311	SINE (AluYk2)	1
CP068277.2:218 986 191	316	SINE (AluYk2)	1
CP068277.2:230 329 881	304	SINE (AluYb8)	1
CP068277.2:237 215 622	307	SINE (AluYa5)	1
CP068277.2:241 802 064	37	SINE (Alu)	1
CP068276.2:120 305	96	Retroposon (SVA_F)	1
CP068276.2:2 546 464	315	SINE (AluYe5)	1
CP068276.2:5 444 371	326	SINE (AluYb8)	1
CP068276.2:6 398 847	319	SINE (AluYa5)	1
CP068276.2:13 196 975	45	LTR (HERVH-int)	1
CP068276.2:13 955 731	75	LTR (MER57-int)	1
CP068276.2:34 814 746	242	SINE (AluYa5)	1
CP068276.2:42 231 893	29	SINE (Alu)	1
CP068276.2:44 593 483	124	Retroposon (SVA_F)	1
CP068276.2:44 593 484	84	Retroposon (SVA_F)	1
CP068276.2:44 594 092	211	Retroposon (SVA_F)	1
CP068276.2:44 604 010	316	SINE (AluYa5)	1
CP068276.2:50 018 029	132	SINE (AluY)	1
CP068276.2:54 460 543	251	SINE (AluY)	1
CP068276.2:64 261 102	61	LTR (HERVH-int)	1
CP068276.2:65 116 309	305	SINE (AluYc)	1
CP068276.2:65 348 770	48	Retroposon (SVA_F)	1
CP068276.2:74 292 982	328	SINE (AluY)	1
CP068276.2:102 198 725	315	SINE (AluYa5)	1
CP068276.2:107 771 785	320	SINE (AluYa5)	1
CP068276.2:121 551 351	57	LTR (MSTA)	1
CP068276.2:123 008 476	317	SINE (AluYa5)	1
CP068276.2:123 048 382	50	LINE (L1M1)	1
CP068276.2:123 569 366	133	SINE (AluSp)	1
CP068276.2:123 667 376	330	SINE (AluYb8)	1
CP068276.2:125 860 606	118	LTR (LTR12C)	1
CP068276.2:126 051 006	332	SINE (AluYa5)	1
CP068276.2:131 521 066	317	SINE (AluYe5)	1
CP068276.2:137 865 383	60	SINE (AluY)	1
CP068276.2:141 752 398	57	LINE (L1M2)	1
CP068276.2:145 037 173	324	SINE (AluYb8)	1
CP068276.2:150 220 893	319	SINE (AluYa5)	1
CP068276.2:153 756 655	320	SINE (AluY)	1
CP068276.2:156 746 251	39	Retroposon (SVA_B)	1
CP068276.2:158 030 254	325	SINE (AluYb9)	1
CP068276.2:169 505 778	323	SINE (AluY)	1
CP068276.2:170 612 969	307	SINE (AluYk12)	1
CP068276.2:175 359 957	318	SINE (AluYa5)	1
CP068276.2:179 802 853	48	Retroposon (SVA_F)	1
CP068276.2:182 940 163	309	SINE (AluYa5)	1
CP068276.2:184 038 383	33	LINE (L1P4)	1
CP068276.2:192 183 565	317	SINE (AluYa5)	1
CP068276.2:192 186 027	325	SINE (AluYa5)	1
CP068276.2:196 356 056	275	SINE (AluYa5)	1
CP068276.2:197 233 937	327	SINE (AluYb8)	1
CP068276.2:198 513 690	136	SINE (AluSg)	1
CP068276.2:200 963 886	45	SINE (FRAM)	1
CP068276.2:208 081 694	324	SINE (AluJb)	1
CP068276.2:208 519 865	314	SINE (AluYa5)	1
CP068276.2:214 127 683	242	SINE (AluYa5)	1
CP068276.2:215 319 682	77	Retroposon (SVA_F)	1
CP068276.2:215 369 785	171	SINE (AluYb9)	1
CP068276.2:232 042 724	319	SINE (AluYk2)	1
CP068276.2:233 687 447	149	SINE (AluSx)	1
CP068275.2:1 238 682	63	LTR (HERVH-int)	1
CP068275.2:20 459 977	66	LTR (LTR25-int)	1
CP068275.2:24 054 053	254	SINE (AluYi6)	1
CP068275.2:26 747 814	317	SINE (AluYk2)	1
CP068275.2:29 581 534	319	SINE (AluYb8)	1
CP068275.2:32 897 378	95	LINE (L1M4)	1
CP068275.2:34 675 723	40	LINE (L1MA1)	1
CP068275.2:36 799 001	305	SINE (AluYc)	1
CP068275.2:38 085 678	298	Retroposon (SVA_F)	1
CP068275.2:38 119 250	134	SINE (AluJb)	1
CP068275.2:45 517 532	316	SINE (AluY)	1
CP068275.2:48 240 089	116	Retroposon (SVA_F)	1
CP068275.2:50 833 539	38	Retroposon (SVA_C)	1
CP068275.2:50 871 694	344	SINE (AluY)	1
CP068275.2:58 330 973	39	Retroposon (SVA_B)	1
CP068275.2:61 714 843	176	Retroposon (SVA_F)	1
CP068275.2:63 598 884	311	SINE (AluYb8)	1
CP068275.2:65 941 603	35	LINE (L1PA6)	1
CP068275.2:66 758 056	136	SINE (AluJr4)	1
CP068275.2:66 961 938	131	LINE (L1P3)	1
CP068275.2:68 858 645	274	SINE (AluYe5)	1
CP068275.2:68 878 080	290	SINE (AluYa5)	1
CP068275.2:80 303 273	45	LINE (L1PREC2)	1
CP068275.2:82 376 966	107	LTR (MER4E1)	1
CP068275.2:83 763 966	254	LINE (L1PA8A)	1
CP068275.2:96 460 083	73	Retroposon (SVA_A)	1
CP068275.2:100 887 226	232	LTR (LTR8)	1
CP068275.2:112 582 135	127	LINE (L1PA16)	1
CP068275.2:114 228 331	327	SINE (AluYb9)	1
CP068275.2:114 926 706	49	LINE (L1P3)	1
CP068275.2:118 025 861	332	SINE (AluYa8)	1
CP068275.2:125 139 153	324	SINE (AluYb8)	1
CP068275.2:127 413 483	317	SINE (AluYa5)	1
CP068275.2:132 084 525	48	Retroposon (SVA_F)	1
CP068275.2:132 210 422	310	SINE (AluYb8)	1
CP068275.2:136 876 080	57	LINE (L1MCa)	1
CP068275.2:143 552 741	318	SINE (AluYa5)	1
CP068275.2:147 504 053	77	LTR (LTR12D)	1
CP068275.2:152 131 587	97	Retroposon (SVA_F)	1
CP068275.2:152 131 779	252	Retroposon (SVA_E)	1
CP068275.2:174 782 780	119	LTR (LTR12C)	1
CP068275.2:189 926 620	313	SINE (AluYk2)	1
CP068275.2:191 982 178	322	SINE (AluYb8)	1
CP068275.2:198 426 294	61	LINE (L1M1)	1
CP068275.2:200 460 370	71	SINE (AluJb)	1
CP068274.2:4 318 462	65	LTR (LTR12_v)	1
CP068274.2:4 626 805	51	SINE (MIR)	1
CP068274.2:20 388 569	987	LINE (L1M5)	1
CP068274.2:38 777 883	75	Retroposon (SVA_B)	1
CP068274.2:38 778 081	181	Retroposon (SVA_E)	1
CP068274.2:39 675 502	162	SINE (AluSx)	1
CP068274.2:44 835 889	174	SINE (AluYb8)	1
CP068274.2:58 431 094	242	SINE (AluYa5)	1
CP068274.2:58 620 850	322	SINE (AluYb8)	1
CP068274.2:59 545 991	194	SINE (AluYc)	1
CP068274.2:67 669 116	731	LTR (LTR25-int)	1
CP068274.2:67 788 030	290	SINE (AluY)	1
CP068274.2:71 961 165	151	SINE (AluYb8)	1
CP068274.2:73 581 960	186	LINE (L1PA2)	1
CP068274.2:88 719 288	308	SINE (AluYa5)	1
CP068274.2:89 207 100	34	SINE (Alu)	1
CP068274.2:93 980 210	61	LTR (MLT1A)	1
CP068274.2:98 264 406	317	SINE (AluYb8)	1
CP068274.2:99 966 117	316	SINE (AluYb9)	1
CP068274.2:119 058 267	27	LTR (THE1-int)	1
CP068274.2:123 023 912	318	SINE (AluYa5)	1
CP068274.2:136 997 523	414	LINE (L1HS)	1
CP068274.2:137 536 644	411	LTR (HERVL40-int)	1
CP068274.2:142 173 781	48	Retroposon (SVA_F)	1
CP068274.2:145 008 461	48	LTR (THE1D)	1
CP068274.2:147 791 504	326	SINE (AluYa5)	1
CP068274.2:153 595 372	142	LINE (L1P3)	1
CP068274.2:153 696 604	324	SINE (AluYk11)	1
CP068274.2:153 984 112	97	Retroposon (SVA_F)	1
CP068274.2:154 538 658	126	Retroposon (SVA_F)	1
CP068274.2:158 831 227	103	SINE (AluYd8)	1
CP068274.2:166 928 648	313	SINE (AluYb8)	1
CP068274.2:171 244 192	111	LTR (MER4A)	1
CP068274.2:176 462 509	318	SINE (AluY)	1
CP068274.2:181 862 706	314	SINE (AluYi6)	1
CP068274.2:184 287 169	205	Retroposon (SVA_A)	1
CP068274.2:188 770 999	325	SINE (AluSx)	1
CP068274.2:188 804 270	286	SINE (AluYk12)	1
CP068273.2:1 857 117	311	SINE (AluYb8)	1
CP068273.2:6 146 641	311	SINE (AluY)	1
CP068273.2:12 123 868	302	SINE (AluYa5)	1
CP068273.2:12 256 876	29	LINE (L1PA14)	1
CP068273.2:16 655 697	310	SINE (AluYg6)	1
CP068273.2:24 017 957	285	SINE (AluY)	1
CP068273.2:25 758 140	221	LINE (L1P1)	1
CP068273.2:26 290 891	59	LTR (LTR5A)	1
CP068273.2:27 677 538	122	SINE (AluJb)	1
CP068273.2:29 034 801	73	Retroposon (SVA_B)	1
CP068273.2:38 033 737	91	LTR (Harlequin-int)	1
CP068273.2:43 769 164	68	LTR (MER50B)	1
CP068273.2:43 795 329	321	SINE (AluYb8)	1
CP068273.2:56 842 940	47	Retroposon (SVA_F)	1
CP068273.2:66 799 023	343	Retroposon (SVA_F)	1
CP068273.2:69 790 093	650	LINE (L1HS)	1
CP068273.2:69 886 321	61	Retroposon (SVA_D)	1
CP068273.2:80 745 714	312	SINE (AluY)	1
CP068273.2:83 675 995	306	SINE (AluYh7)	1
CP068273.2:100 778 994	312	SINE (AluY)	1
CP068273.2:103 260 583	41	LTR (LTR12E)	1
CP068273.2:105 102 556	38	LTR (LTR19A)	1
CP068273.2:108 350 710	102	LINE (L1M5)	1
CP068273.2:111 960 940	186	SINE (AluYc)	1
CP068273.2:118 013 084	306	SINE (AluY)	1
CP068273.2:121 495 295	313	SINE (AluY)	1
CP068273.2:134 951 042	305	SINE (AluYa5)	1
CP068273.2:138 669 937	65	LTR (LTR12)	1
CP068273.2:139 924 858	293	SINE (AluSx)	1
CP068273.2:143 069 211	312	SINE (AluYa5)	1
CP068273.2:147 526 118	318	SINE (AluYb8)	1
CP068273.2:180 746 045	173	SINE (AluY)	1
CP068272.2:5 217 730	320	SINE (AluY)	1
CP068272.2:5 704 809	356	Retroposon (SVA_F)	1
CP068272.2:5 938 114	338	SINE (AluYa5)	1
CP068272.2:10 902 109	134	SINE (AluSz)	1
CP068272.2:13 394 506	330	SINE (AluYb8)	1
CP068272.2:15 598 802	39	Retroposon (SVA_E)	1
CP068272.2:18 770 685	314	SINE (AluY)	1
CP068272.2:19 027 502	322	SINE (AluYb9)	1
CP068272.2:28 094 493	329	SINE (AluYb8)	1
CP068272.2:30 339 365	39	Retroposon (SVA_D)	1
CP068272.2:32 343 356	294	SINE (AluSc)	1
CP068272.2:32 604 181	308	SINE (AluY)	1
CP068272.2:42 430 460	160	SINE (AluSg4)	1
CP068272.2:43 757 249	314	SINE (AluYa5)	1
CP068272.2:45 127 498	324	SINE (AluYe5)	1
CP068272.2:45 835 182	327	SINE (AluY)	1
CP068272.2:54 692 012	140	SINE (AluSg)	1
CP068272.2:74 838 911	39	Retroposon (SVA_B)	1
CP068272.2:86 651 704	330	SINE (AluY)	1
CP068272.2:100 823 615	45	Retroposon (SVA_F)	1
CP068272.2:105 950 363	309	SINE (AluYa5)	1
CP068272.2:107 853 091	317	SINE (AluYb8)	1
CP068272.2:109 130 963	270	Retroposon (SVA_E)	1
CP068272.2:109 208 497	105	SINE (AluJb)	1
CP068272.2:115 951 896	105	SINE (AluSc)	1
CP068272.2:119 490 091	295	SINE (AluYa5)	1
CP068272.2:138 121 232	276	SINE (AluYa5)	1
CP068272.2:142 199 747	131	LTR (LTR12)	1
CP068272.2:157 199 315	307	SINE (AluY)	1
CP068272.2:158 278 908	327	SINE (AluYb8)	1
CP068272.2:159 090 611	39	LTR (LTR8)	1
CP068271.2:2 382 179	77	Retroposon (SVA_F)	1
CP068271.2:6 790 042	96	Retroposon (SVA_F)	1
CP068271.2:12 372 986	319	SINE (AluYb8)	1
CP068271.2:12 396 187	31	SINE (AluSg)	1
CP068271.2:14 540 334	319	SINE (AluYb8)	1
CP068271.2:29 929 681	37	LTR (HERVH-int)	1
CP068271.2:38 447 512	50	LTR (LTR1)	1
CP068271.2:38 626 104	315	SINE (AluYa5)	1
CP068271.2:38 630 323	336	SINE (AluYb8)	1
CP068271.2:39 867 657	329	SINE (AluYb8)	1
CP068271.2:48 018 075	321	SINE (AluYa5)	1
CP068271.2:50 732 080	90	LINE (L1PA4)	1
CP068271.2:56 334 427	321	SINE (AluYb8)	1
CP068271.2:67 832 962	315	SINE (AluYa5)	1
CP068271.2:77 895 803	300	SINE (AluSg)	1
CP068271.2:78 216 802	319	SINE (AluYa5)	1
CP068271.2:81 683 820	41	LINE (L1M4)	1
CP068271.2:83 623 827	326	SINE (AluYj4)	1
CP068271.2:84 052 406	316	SINE (AluYa5)	1
CP068271.2:84 568 345	317	SINE (AluYg6)	1
CP068271.2:85 626 331	314	SINE (AluY)	1
CP068271.2:86 522 262	271	LINE (L1HS)	1
CP068271.2:90 001 659	316	SINE (AluYa5)	1
CP068271.2:91 220 124	318	SINE (AluYa5)	1
CP068271.2:103 838 055	127	SINE (AluJb)	1
CP068271.2:103 937 188	127	SINE (AluJb)	1
CP068271.2:109 206 992	118	LTR (LTR12D)	1
CP068271.2:110 968 118	328	SINE (AluYb8)	1
CP068271.2:115 628 403	310	SINE (AluYa5)	1
CP068271.2:119 569 637	298	SINE (AluYa5)	1
CP068271.2:119 758 768	316	SINE (AluYe5)	1
CP068271.2:121 741 949	31	SINE (Alu)	1
CP068271.2:130 830 383	317	SINE (AluSx)	1
CP068271.2:132 541 792	144	SINE (AluJb)	1
CP068271.2:134 472 994	155	SINE (AluSx)	1
CP068271.2:136 812 007	334	SINE (AluYa5)	1
CP068271.2:146 522 790	32	LINE (L1P1)	1
CP068271.2:153 713 300	130	SINE (AluSx)	1
CP068271.2:155 766 181	330	SINE (AluYb8)	1
CP068270.2:6 485 699	318	SINE (AluYe5)	1
CP068270.2:9 270 409	324	SINE (AluYa5)	1
CP068270.2:12 907 672	329	SINE (AluYa5)	1
CP068270.2:23 488 427	39	SINE (Alu)	1
CP068270.2:34 580 253	67	LINE (L1M3)	1
CP068270.2:37 215 036	30	DNA (Tigger2a)	1
CP068270.2:41 686 987	324	SINE (AluYb8)	1
CP068270.2:60 716 533	315	SINE (AluYa5)	1
CP068270.2:62 176 579	46	Retroposon (SVA_F)	1
CP068270.2:66 658 366	175	Retroposon (SVA_F)	1
CP068270.2:87 814 363	48	Retroposon (SVA_F)	1
CP068270.2:93 464 962	163	LINE (L1PB2)	1
CP068270.2:98 966 642	39	Retroposon (SVA_D)	1
CP068270.2:99 578 329	325	SINE (AluSx)	1
CP068270.2:107 844 447	325	SINE (AluYb8)	1
CP068270.2:128 443 757	46	Retroposon (SVA_F)	1
CP068270.2:132 610 615	40	LTR (LTR12E)	1
CP068269.2:6 664 828	135	SINE (AluY)	1
CP068269.2:6 795 499	39	Retroposon (SVA_D)	1
CP068269.2:6 804 463	98	Retroposon (SVA_F)	1
CP068269.2:7 855 153	327	SINE (AluYb9)	1
CP068269.2:8 652 319	274	SINE (AluYa5)	1
CP068269.2:9 145 491	320	SINE (AluYb8)	1
CP068269.2:16 401 598	326	SINE (AluY)	1
CP068269.2:21 052 363	330	SINE (AluYa5)	1
CP068269.2:30 020 771	69	LINE (L1M3)	1
CP068269.2:33 442 084	36	Retroposon (SVA_F)	1
CP068269.2:34 156 745	66	Retroposon (SVA_F)	1
CP068269.2:41 137 102	327	SINE (AluYa5)	1
CP068269.2:41 633 588	68	LINE (L1PA2)	1
CP068269.2:41 696 039	86	LINE (L1P4b)	1
CP068269.2:84 265 383	48	SINE (Alu)	1
CP068269.2:87 062 332	178	SINE (AluYb8)	1
CP068269.2:91 269 591	318	SINE (AluY)	1
CP068269.2:92 388 707	326	SINE (AluYb8)	1
CP068269.2:96 285 779	31	SINE (Alu)	1
CP068269.2:112 443 781	81	SINE (AluSz)	1
CP068269.2:138 384 259	298	LINE (L1M4)	1
CP068269.2:143 939 557	43	SINE (AluYi6)	1
CP068268.2:1 248 623	326	SINE (AluYa5)	1
CP068268.2:3 057 186	34	SINE (AluYh3)	1
CP068268.2:5 118 840	47	LTR (MER39B)	1
CP068268.2:9 275 805	273	Retroposon (SVA_A)	1
CP068268.2:21 756 235	35	SINE (AluJb)	1
CP068268.2:29 201 482	188	LTR (MLT1F-int)	1
CP068268.2:46 272 895	39	Retroposon (SVA_C)	1
CP068268.2:55 788 354	125	LINE (L1M4)	1
CP068268.2:68 711 145	32	LTR (MSTB2)	1
CP068268.2:87 084 164	304	SINE (AluY)	1
CP068268.2:96 787 855	315	SINE (AluYa5)	1
CP068268.2:97 822 112	47	Retroposon (SVA_F)	1
CP068268.2:105 697 311	328	SINE (AluY)	1
CP068268.2:116 480 342	27	LINE (L1P1)	1
CP068268.2:120 078 047	39	Retroposon (SVA_C)	1
CP068268.2:123 851 456	319	SINE (AluY)	1
CP068268.2:127 459 264	66	LINE (L1M2)	1
CP068268.2:131 025 575	97	LINE (L1PA7)	1
CP068267.2:473 330	320	SINE (AluYe5)	1
CP068267.2:9 522 489	36	SINE (AluY)	1
CP068267.2:9 857 725	318	SINE (AluYb8)	1
CP068267.2:22 361 771	123	LINE (L1PA16)	1
CP068267.2:25 682 675	345	SINE (AluYa5)	1
CP068267.2:33 652 002	320	SINE (AluYk2)	1
CP068267.2:44 657 278	50	SINE (AluYh7)	1
CP068267.2:47 253 972	175	Retroposon (SVA_F)	1
CP068267.2:55 579 693	317	SINE (AluY)	1
CP068267.2:56 473 791	317	SINE (AluYg6)	1
CP068267.2:60 485 034	79	LINE (L1HS)	1
CP068267.2:63 882 701	259	LINE (L1MB8)	1
CP068267.2:74 485 830	59	SINE (AluJb)	1
CP068267.2:75 339 543	77	Retroposon (SVA_F)	1
CP068267.2:77 028 418	177	Retroposon (SVA_F)	1
CP068267.2:80 466 705	125	LTR (LTR12D)	1
CP068267.2:82 117 597	39	Retroposon (SVA_C)	1
CP068267.2:95 142 638	42	SINE (Alu)	1
CP068267.2:96 512 809	42	LTR (LTR46)	1
CP068267.2:101 555 768	328	SINE (AluYb8)	1
CP068267.2:104 919 972	320	SINE (AluYa5)	1
CP068267.2:106 732 181	290	SINE (AluY)	1
CP068267.2:118 715 549	133	SINE (AluSx)	1
CP068267.2:120 365 075	37	SINE (AluYm1)	1
CP068267.2:125 878 132	153	LINE (L1PA10)	1
CP068267.2:130 127 567	38	Retroposon (SVA_B)	1
CP068266.2:413 743	31	SINE (AluSp)	1
CP068266.2:5 668 028	308	SINE (AluYd8)	1
CP068266.2:6 807 792	255	SINE (AluYk2)	1
CP068266.2:7 721 119	143	SINE (AluSg)	1
CP068266.2:7 830 662	336	SINE (AluYb8)	1
CP068266.2:8 456 751	319	SINE (AluYg6)	1
CP068266.2:8 608 370	115	Retroposon (SVA_B)	1
CP068266.2:8 608 845	46	Retroposon (SVA_F)	1
CP068266.2:12 283 010	97	Retroposon (SVA_F)	1
CP068266.2:14 045 351	192	Retroposon (SVA_C)	1
CP068266.2:29 543 251	313	SINE (AluYa5)	1
CP068266.2:30 029 848	199	SINE (AluYa5)	1
CP068266.2:41 239 964	345	LINE (L1P3)	1
CP068266.2:44 984 372	311	SINE (AluYa5)	1
CP068266.2:45 611 156	323	SINE (AluYb8)	1
CP068266.2:51 007 643	447	SINE (AluSx)	1
CP068266.2:56 751 565	48	Retroposon (SVA_F)	1
CP068266.2:64 720 062	176	SINE (AluYa5)	1
CP068266.2:70 065 499	63	LTR (HERVH-int)	1
CP068266.2:71 354 899	23	LTR (LTR12E)	1
CP068266.2:77 423 086	101	SINE (MIRb)	1
CP068266.2:77 981 522	327	SINE (AluYb8)	1
CP068266.2:86 830 422	142	SINE (AluSx)	1
CP068266.2:87 458 390	315	SINE (AluY)	1
CP068266.2:94 256 702	321	SINE (AluYa5)	1
CP068266.2:96 285 798	317	SINE (AluYa5)	1
CP068266.2:96 952 164	313	SINE (AluYa5)	1
CP068266.2:98 553 558	310	SINE (AluSx)	1
CP068266.2:101 881 504	99	SINE (AluYb8)	1
CP068266.2:126 429 324	314	SINE (AluYb8)	1
CP068265.2:5 252 040	71	LINE (L1MB2)	1
CP068265.2:13 715 682	196	SINE (AluYb8)	1
CP068265.2:19 743 748	49	LTR (LTR3B_v)	1
CP068265.2:20 642 557	145	Retroposon (SVA_E)	1
CP068265.2:20 642 901	48	Retroposon (SVA_F)	1
CP068265.2:42 185 736	1 644	Retroposon (SVA_F)	1
CP068265.2:45 366 990	318	SINE (AluYa5)	1
CP068265.2:45 691 032	310	SINE (AluY)	1
CP068265.2:45 736 391	76	Retroposon (SVA_F)	1
CP068265.2:49 104 652	46	LINE (L1PA8)	1
CP068265.2:50 293 367	95	Retroposon (SVA_F)	1
CP068265.2:60 433 754	322	SINE (AluYa5)	1
CP068265.2:60 661 632	155	LINE (L1PA8A)	1
CP068265.2:62 171 725	317	SINE (AluYa5)	1
CP068265.2:69 509 379	322	SINE (AluYb8)	1
CP068265.2:81 206 374	108	LTR (MLT1A1)	1
CP068265.2:82 608 310	219	SINE (AluYc)	1
CP068265.2:84 838 216	167	SINE (AluYa5)	1
CP068265.2:85 705 616	304	SINE (AluYa5)	1
CP068265.2:85 943 033	288	SINE (AluYa5)	1
CP068265.2:88 073 850	315	SINE (AluYa5)	1
CP068265.2:88 973 266	148	SINE (AluY)	1
CP068265.2:89 698 651	101	LTR (LTR12C)	1
CP068265.2:98 181 350	134	SINE (AluYk2)	1
CP068265.2:100 191 900	100	LTR (LTR12C)	1
CP068265.2:109 388 985	314	SINE (AluYb8)	1
CP068265.2:109 862 683	128	LTR (LTR12C)	1
CP068265.2:109 863 304	40	LTR (LTR12E)	1
CP068265.2:110 189 655	246	SINE (AluY)	1
CP068265.2:112 115 809	312	SINE (AluYa5)	1
CP068264.2:4 080 751	330	SINE (AluYb8)	1
CP068264.2:4 176 442	306	SINE (AluYa5)	1
CP068264.2:18 410 919	164	SINE (AluSx4)	1
CP068264.2:19 797 762	40	LTR (LTR12B)	1
CP068264.2:20 430 427	311	SINE (AluYa5)	1
CP068264.2:22 030 070	438	LINE (L1HS)	1
CP068264.2:25 634 689	47	Retroposon (SVA_F)	1
CP068264.2:25 671 371	318	SINE (AluY)	1
CP068264.2:28 610 960	305	SINE (AluYa5)	1
CP068264.2:29 128 780	87	SINE (AluJo)	1
CP068264.2:29 131 238	313	SINE (AluY)	1
CP068264.2:31 745 103	39	Retroposon (SVA_C)	1
CP068264.2:34 300 938	324	SINE (AluYa5)	1
CP068264.2:34 313 688	131	SINE (AluYe5)	1
CP068264.2:50 176 931	283	SINE (AluYa5)	1
CP068264.2:53 285 736	306	SINE (AluYa5)	1
CP068264.2:67 764 612	311	SINE (AluSx)	1
CP068264.2:70 959 770	39	Retroposon (SVA_F)	1
CP068264.2:88 788 220	312	SINE (AluYa5)	1
CP068264.2:92 910 435	53	SINE (Alu)	1
CP068263.2:20 376 616	44	SINE (Alu)	1
CP068263.2:25 263 076	324	SINE (AluYb8)	1
CP068263.2:32 444 264	321	SINE (AluY)	1
CP068263.2:34 360 211	346	SINE (AluYa5)	1
CP068263.2:38 489 398	36	Retroposon (SVA_F)	1
CP068263.2:38 614 143	315	SINE (AluYg6)	1
CP068263.2:53 913 589	228	Retroposon (SVA_F)	1
CP068263.2:56 106 612	319	SINE (AluYc)	1
CP068263.2:58 727 456	317	SINE (AluY)	1
CP068263.2:71 508 181	321	SINE (AluY)	1
CP068263.2:86 307 146	147	Retroposon (SVA_E)	1
CP068263.2:92 039 791	305	SINE (AluYa5)	1
CP068263.2:95 045 999	328	SINE (AluYa5)	1
CP068263.2:97 321 467	49	SINE (Alu)	1
CP068263.2:98 667 707	310	SINE (AluY)	1
CP068262.2:480 325	311	SINE (AluSx)	1
CP068262.2:4 839 789	42	SINE (Alu)	1
CP068262.2:15 116 749	85	SINE (AluSc)	1
CP068262.2:21 521 201	122	SINE (AluJb)	1
CP068262.2:24 129 334	325	SINE (AluY)	1
CP068262.2:62 994 200	43	SINE (AluJo)	1
CP068262.2:63 015 018	315	SINE (AluYa5)	1
CP068262.2:64 555 275	134	SINE (AluSz)	1
CP068262.2:64 559 334	55	SINE (AluSx3)	1
CP068262.2:75 622 940	53	SINE (AluSg)	1
CP068262.2:83 862 434	133	SINE (AluSc8)	1
CP068261.2:455 384	96	Retroposon (SVA_F)	1
CP068261.2:3 433 087	132	SINE (AluSg)	1
CP068261.2:5 924 812	314	SINE (AluYa5)	1
CP068261.2:11 880 696	59	LTR (HERVH-int)	1
CP068261.2:37 220 145	335	SINE (AluYb8)	1
CP068261.2:38 008 694	192	SINE (AluYc)	1
CP068261.2:51 788 427	313	SINE (AluYb8)	1
CP068261.2:53 829 064	311	SINE (AluYa5)	1
CP068261.2:55 582 094	669	LINE (L1PREC2)	1
CP068261.2:61 447 465	325	SINE (AluY)	1
CP068261.2:75 514 650	307	SINE (AluYg6)	1
CP068261.2:75 907 696	46	SINE (AluJr4)	1
CP068261.2:75 935 935	315	SINE (AluYb8)	1
CP068261.2:76 696 269	95	SINE (AluY)	1
CP068261.2:78 133 410	332	SINE (AluYb8)	1
CP068261.2:82 055 352	326	SINE (AluYb8)	1
CP068260.2:8 797 339	111	SINE (AluJo)	1
CP068260.2:29 765 946	318	SINE (AluYb8)	1
CP068260.2:35 273 621	317	SINE (AluYa5)	1
CP068260.2:39 128 268	317	SINE (AluYa5)	1
CP068260.2:40 963 076	315	SINE (AluY)	1
CP068260.2:46 361 667	324	SINE (AluYb8)	1
CP068260.2:46 381 044	32	SINE (Alu)	1
CP068260.2:53 663 279	320	SINE (AluYb8)	1
CP068260.2:53 996 308	73	LINE (L1PBa)	1
CP068260.2:66 072 639	337	SINE (AluY)	1
CP068260.2:76 087 428	324	SINE (AluYb8)	1
CP068260.2:77 479 251	472	LINE (L1HS)	1
CP068259.2:646 264	72	SINE (AluSp)	1
CP068259.2:773 677	308	SINE (AluJb)	1
CP068259.2:2 535 989	124	SINE (AluJb)	1
CP068259.2:6 141 006	264	SINE (AluYb8)	1
CP068259.2:6 151 665	290	SINE (AluSc8)	1
CP068259.2:6 976 775	329	SINE (AluYb8)	1
CP068259.2:7 740 152	314	SINE (AluYb8)	1
CP068259.2:16 391 116	140	SINE (AluJb)	1
CP068259.2:18 052 543	47	Retroposon (SVA_F)	1
CP068259.2:29 865 974	312	SINE (AluYb8)	1
CP068259.2:36 653 353	175	Retroposon (SVA_F)	1
CP068259.2:36 780 217	299	SINE (AluY)	1
CP068259.2:49 334 643	307	SINE (AluY)	1
CP068259.2:53 674 286	101	SINE (AluJb)	1
CP068259.2:54 049 533	135	SINE (AluSx)	1
CP068259.2:55 665 437	134	SINE (AluSx)	1
CP068259.2:56 876 654	36	SINE (Alu)	1
CP068259.2:58 069 652	330	SINE (AluJb)	1
CP068259.2:59 606 629	325	SINE (AluYa5)	1
CP068258.2:5 422 575	49	LTR (MSTB)	1
CP068258.2:5 544 074	303	SINE (AluYc)	1
CP068258.2:5 544 134	289	SINE (AluYc)	1
CP068258.2:16 945 493	337	SINE (AluY)	1
CP068258.2:16 956 782	41	SINE (AluYa5)	1
CP068258.2:21 237 843	1 434	LINE (L1M3)	1
CP068258.2:30 503 817	38	Retroposon (SVA_C)	1
CP068258.2:30 946 834	128	LTR (LTR5A)	1
CP068258.2:31 430 118	812	LTR (PRIMA41-int)	1
CP068258.2:31 915 417	390	LINE (L1P1)	1
CP068258.2:38 114 785	94	SINE (AluSz6)	1
CP068258.2:55 429 289	321	SINE (AluYb8)	1
CP068258.2:62 091 491	125	SINE (AluSc)	1
CP068258.2:62 926 797	317	SINE (AluYa5)	1
CP068258.2:63 187 711	320	SINE (AluYb8)	1
CP068258.2:63 442 811	39	Retroposon (SVA_D)	1
CP068257.2:11 757 340	320	SINE (AluYa5)	1
CP068257.2:12 279 099	187	Retroposon (SVA_B)	1
CP068257.2:20 801 787	336	SINE (AluYb8)	1
CP068257.2:21 725 996	321	SINE (AluYk2)	1
CP068257.2:34 874 715	321	SINE (AluYb8)	1
CP068257.2:38 974 145	118	SINE (AluYa5)	1
CP068257.2:42 828 950	134	SINE (AluSz)	1
CP068256.2:17 900 864	326	SINE (AluYb8)	1
CP068256.2:22 593 267	314	SINE (AluYa5)	1
CP068256.2:25 763 740	142	SINE (AluSc8)	1
CP068256.2:29 242 941	314	SINE (AluYa5)	1
CP068256.2:32 276 540	316	SINE (AluY)	1
CP068256.2:32 611 949	103	LTR (MER11C)	1
CP068256.2:32 967 701	40	LTR (HERVH-int)	1
CP068256.2:34 820 706	63	SINE (AluYh7)	1
CP068256.2:43 634 478	325	SINE (AluYb8)	1
CP068255.2:247 895	164	SINE (AluJb)	1
CP068255.2:295 108	164	SINE (AluSx)	1
CP068255.2:3 778 903	57	LINE (L1PB1)	1
CP068255.2:22 237 816	315	SINE (AluY)	1
CP068255.2:24 293 369	129	Retroposon (SVA_F)	1
CP068255.2:25 517 583	333	SINE (AluYb8)	1
CP068255.2:31 581 182	315	SINE (AluY)	1
CP068255.2:45 336 671	221	LINE (L1M4b)	1
CP068255.2:45 683 115	125	Retroposon (SVA_F)	1
CP068255.2:52 216 963	324	SINE (AluYb8)	1
CP068255.2:56 310 479	309	LINE (L1P2)	1
CP068255.2:56 311 246	122	LINE (L1P1)	1
CP068255.2:65 312 828	122	LINE (L2a)	1
CP068255.2:83 656 504	86	LINE (L1MC5)	1
CP068255.2:84 713 986	311	SINE (AluYa5)	1
CP068255.2:85 441 294	40	LTR (LTR12B)	1
CP068255.2:85 459 363	450	LINE (L1P4)	1
CP068255.2:86 915 067	295	SINE (AluYb8)	1
CP068255.2:116 082 428	329	SINE (AluY)	1
CP068255.2:146 566 678	210	LINE (L1P2)	1
CP086569.2:242 043	168	SINE (AluSx)	1
CP086569.2:544 722	162	Retroposon (SVA_E)	1
CP086569.2:739 730	308	SINE (AluSx)	1
CP086569.2:949 758	135	SINE (AluSq)	1

• 1 815 TE insertions were found with an AF ≥ 0.5.

A Manhattan plot of AFs is shown below.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat family	Repeat subfamily	Unique	Total (lax)	Total (strict)
DNA	hAT	4	7	7
	TcMar	1	2	2
LINE	L1	103	199	192
	L2	2	4	2
LTR	ERV1	42	72	67
	ERVK	5	10	10
	ERVL	5	10	10
Retroposon	SVA	151	279	244
SINE	Alu	783	1 501	1 488
	MIR	1	2	2
Total	-	1 097	2 086	2 024

2.1 Class I Elements

2.1.1 Distribution

1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name	Unique	Total (lax)	Total (strict)
SVA A	13	21	20
SVA B	4	8	8
SVA D	8	15	13
SVA E	23	42	38
SVA F	101	189	161
SVA F1	2	4	4
Total	151	279	244

Click to show table with Alu counts by name.

Count of _Alu_ elements by name

Name	Unique	Total (lax)	Total (strict)
Alu	4	8	8
AluJb	21	39	39
AluJo	4	7	6
AluJr4	1	2	1
AluSc	4	7	7
AluSc8	3	6	6
AluSg	13	25	21
AluSg4	2	4	4
AluSp	2	4	4
AluSq	4	8	8
AluSq2	1	2	2
AluSx	36	64	61
AluSx1	1	2	2
AluSx3	2	4	4
AluSx4	3	5	4
AluSz	5	10	10
AluSz6	2	4	4
AluY	161	311	310
AluYa5	248	475	474
AluYa8	6	12	12
AluYb8	146	280	280
AluYb9	22	43	43
AluYc	9	18	18
AluYd8	5	9	9
AluYe5	24	48	48
AluYg6	14	28	28
AluYh7	3	5	5
AluYi6	2	4	4
AluYj4	2	4	4
AluYk11	3	6	6
AluYk12	3	5	5
AluYk2	21	40	39
AluYk3	4	8	8
FLAM C	1	2	2
FRAM	1	2	2
Total	783	1 501	1 488

Click to show table with L1 counts by name.

Count of L1 elements by name

Name	Unique	Total (lax)	Total (strict)
L1HS	54	105	103
L1M2	2	4	4
L1M2a	1	2	1
L1M3	1	2	2
L1M3b	1	2	2
L1M4	3	6	5
L1M5	1	2	2
L1MA1	1	2	2
L1MA5	1	2	2
L1MA8	1	2	2
L1MB2	1	2	2
L1MB8	1	2	2
L1MC	2	4	4
L1MC3	1	2	1
L1MC4	2	4	4
L1MC5	1	2	2
L1MD3	1	1	1
L1P1	5	9	8
L1P2	3	4	4
L1P3	6	12	11
L1P3b	1	2	2
L1PA10	1	2	2
L1PA16	2	4	4
L1PA2	4	8	8
L1PA7	2	4	4
L1PB	2	4	4
L1PB1	1	2	2
L1PBa1	1	2	2
Total	103	199	192

2.1.2 Class II TEs on gene sequences

Click to show table with 1093 rows.

Position	Length	Type	Gene	Annotation	Occurrences
CP068255.2:1 234 402	119	SINE (Alu)	SLC25A6	Intron	2
CP068255.2:21 930 360	320	SINE (Alu)	PTCHD1-AS	Intron	1
CP068255.2:22 237 816	315	SINE (Alu)	PTCHD1-AS	Intron	2
CP068255.2:24 293 369	129	Retroposon (SVA)	POLA1	Intron	2
CP068255.2:30 855 306	302	SINE (Alu)	DMD	Intron	1
CP068255.2:31 581 182	315	SINE (Alu)	DMD	Intron	2
CP068255.2:32 882 843	308	SINE (Alu)	DMD	Intron	2
CP068255.2:83 656 504	86	LINE (L1)	SATL1	Intron	2
CP068255.2:83 683 173	329	SINE (Alu)	ZNF711	Intron	2
CP068255.2:84 713 986	311	SINE (Alu)	DACH2	Intron	2
CP068255.2:90 623 038	135	SINE (Alu)	PCDH11X	Intron	2
CP068255.2:100 344 903	51	LINE (L1)	ZMAT1	Intron	2
CP068255.2:120 735 396	327	SINE (Alu)	LOC101928359	Intron	2
CP068255.2:145 121 988	788	LINE (L1)	LOC101928832	Intron	2
CP068255.2:247 895	164	SINE (Alu)	LOC102724521	Intron	2
CP068255.2:295 108	164	SINE (Alu)	LOC102724521	Intron	2
CP068256.2:7 583 739	316	SINE (Alu)	LOC128966699	Promoter	2
CP068256.2:18 235 398	356	SINE (Alu)	SLC25A18	Intron	2
CP068256.2:18 700 162	327	SINE (Alu)	LINC01634	Promoter	2
CP068256.2:20 929 750	292	SINE (Alu)	MED15	Intron	2
CP068256.2:24 409 917	309	SINE (Alu)	GSTT4	Intron	2
CP068256.2:24 455 919	189	SINE (Alu)	GSTTP2	Intron	1
CP068256.2:24 456 566	301	SINE (Alu)	GSTTP2	Intron	1
CP068256.2:25 446 692	336	SINE (Alu)	KIAA1671	Intron	1
CP068256.2:25 461 789	294	SINE (Alu)	KIAA1671	Intron	2
CP068256.2:25 532 879	98	SINE (Alu)	KIAA1671	Intron	2
CP068256.2:27 234 737	2 593	Retroposon (SVA)	MIATNB	Intron	2
CP068256.2:28 841 478	330	SINE (Alu)	TTC28	Intron	2
CP068256.2:29 242 941	314	SINE (Alu)	CCDC117	Intron	2
CP068256.2:32 056 349	295	Retroposon (SVA)	SFI1	Intron	2
CP068256.2:32 056 357	158	Retroposon (SVA)	SFI1	Intron	1
CP068256.2:32 276 540	316	SINE (Alu)	DEPDC5	Intron	2
CP068256.2:34 820 706	63	SINE (Alu)	LOC105373012	Promoter	2
CP068256.2:35 243 538	321	SINE (Alu)	LINC02885	Intron	2
CP068256.2:36 775 979	321	SINE (Alu)	MYH9	Intron	2
CP068256.2:39 828 297	62	LTR (ERV1)	SYNGR1	Intron	2
CP068256.2:41 793 756	312	SINE (Alu)	ZC3H7B	Intron	2
CP068256.2:43 299 732	314	SINE (Alu)	ARFGAP3	Intron	1
CP068256.2:43 634 478	325	SINE (Alu)	TSPO	Intron	2
CP068256.2:44 411 840	1 144	LINE (L1)	PNPLA3	Intron	2
CP068257.2:12 279 099	187	Retroposon (SVA)	LOC110091776	Promoter	2
CP068257.2:12 625 686	326	SINE (Alu)	ABCC13	Intron	2
CP068257.2:13 335 804	328	SINE (Alu)	NRIP1	Intron	2
CP068257.2:13 911 959	389	LINE (L1)	LOC105369302	Intron	2
CP068257.2:15 595 054	1 306	LINE (L1)	LOC107985511	Intron	2
CP068257.2:16 504 323	3 401	LINE (L1)	CHODL	Intron	2
CP068257.2:20 621 840	6 639	LINE (L1)	LOC107985508	Intron	2
CP068257.2:21 725 996	321	SINE (Alu)	D21S2088E	Intron	2
CP068257.2:25 547 133	321	SINE (Alu)	LOC102724355	Intron	2
CP068257.2:27 375 046	47	Retroposon (SVA)	RWDD2B	Intron	1
CP068257.2:34 874 715	321	SINE (Alu)	CLDN14-AS1	Intron	2
CP068257.2:38 467 340	326	SINE (Alu)	DSCAM	Intron	2
CP068257.2:38 974 145	118	SINE (Alu)	DSCAM	Intron	2
CP068257.2:41 308 511	52	LTR (ERV1)	ERVH48-1	Intron	2
CP068258.2:3 292 707	309	SINE (Alu)	DNAAF9	Intron	2
CP068258.2:8 504 792	330	SINE (Alu)	PLCB1	Intron	2
CP068258.2:15 176 135	290	SINE (Alu)	MACROD2	Intron	2
CP068258.2:16 549 972	324	LINE (L1)	KIF16B	Intron	2
CP068258.2:21 237 843	1 434	LINE (L1)	KIZ	Intron	2
CP068258.2:25 627 226	445	Retroposon (SVA)	NINL	Intron	2
CP068258.2:36 934 692	180	SINE (Alu)	PROCR	Intron	2
CP068258.2:37 925 585	291	SINE (Alu)	EPB41L1	Intron	2
CP068258.2:38 114 785	94	SINE (Alu)	DLGAP4	Intron	2
CP068258.2:62 091 491	125	SINE (Alu)	MIR646HG	Intron	2
CP068258.2:63 187 711	320	SINE (Alu)	CDH4	Intron	2
CP068259.2:1 997 543	311	SINE (Alu)	LOC107985278	Intron	2
CP068259.2:2 535 989	124	SINE (Alu)	GNG7	Intron	2
CP068259.2:3 262 720	317	SINE (Alu)	CELF5	Intron	2
CP068259.2:6 141 006	264	SINE (Alu)	ACSBG2	Intron	2
CP068259.2:6 151 665	290	SINE (Alu)	ACSBG2	Intron	2
CP068259.2:6 913 159	321	SINE (Alu)	ADGRE1	Intron	1
CP068259.2:6 976 775	329	SINE (Alu)	ADGRE4P	Intron	2
CP068259.2:13 829 928	123	Retroposon (SVA)	LOC105372284	Intron	2
CP068259.2:17 856 397	166	SINE (Alu)	MAP1S	Intron	1
CP068259.2:18 265 756	319	SINE (Alu)	MAST3	Intron	1
CP068259.2:20 352 161	49	Retroposon (SVA)	LOC124908076	Intron	1
CP068259.2:21 703 198	266	SINE (Alu)	LOC124904670	Intron	2
CP068259.2:21 715 982	318	SINE (Alu)	LOC101929007	Intron	2
CP068259.2:21 716 142	146	SINE (Alu)	LOC101929007	Intron	1
CP068259.2:22 003 892	95	Retroposon (SVA)	LOC105372324	Intron	1
CP068259.2:22 772 645	314	SINE (Alu)	ZNF492	Promoter	2
CP068259.2:22 775 504	308	SINE (Alu)	ZNF492	Intron	1
CP068259.2:23 273 105	316	SINE (Alu)	ZNF730	Intron	2
CP068259.2:23 988 201	50	Retroposon (SVA)	RPSA2	Intron	2
CP068259.2:31 895 943	963	LTR (ERVK)	VSTM2B-DT	Intron	2
CP068259.2:32 477 728	304	SINE (Alu)	URI1	Intron	2
CP068259.2:38 771 243	2 483	Retroposon (SVA)	ZNF146	Intron	2
CP068259.2:41 072 000	115	SINE (Alu)	SPINT2	Intron	1
CP068259.2:44 182 655	293	SINE (Alu)	B9D2	Intron	2
CP068259.2:46 477 902	317	SINE (Alu)	PLAUR	Intron	2
CP068259.2:47 849 106	92	SINE (Alu)	RELB	Intron	2
CP068259.2:54 049 533	135	SINE (Alu)	LOC105372442	Intron	2
CP068259.2:54 361 759	312	SINE (Alu)	LINC01872	Intron	2
CP068259.2:54 446 027	327	SINE (Alu)	ETFB	Intron	2
CP068259.2:55 665 437	134	SINE (Alu)	ZNF701	Intron	2
CP068259.2:58 069 652	330	SINE (Alu)	NLRP2	Intron	2
CP068259.2:58 093 129	49	Retroposon (SVA)	NLRP2	Intron	1
CP068259.2:58 093 134	49	Retroposon (SVA)	NLRP2	Intron	1
CP068259.2:59 549 110	314	SINE (Alu)	ZNF667	Intron	2
CP068259.2:59 606 629	325	SINE (Alu)	ZNF471	Intron	2
CP068259.2:61 203 201	330	SINE (Alu)	ZSCAN18	Intron	2
CP068259.2:61 501 622	164	Retroposon (SVA)	ZNF584	Intron	1
CP068259.2:61 501 716	163	Retroposon (SVA)	ZNF584	Intron	1
CP068259.2:430 825	132	SINE (Alu)	CIMAP1D	Intron	2
CP068259.2:646 264	72	SINE (Alu)	PRSS57	Intron	2
CP068259.2:773 677	308	SINE (Alu)	PLPPR3	Intron	2
CP068260.2:3 032 121	146	SINE (Alu)	EMILIN2	Intron	2
CP068260.2:8 797 339	111	SINE (Alu)	RAB12	Intron	2
CP068260.2:9 388 660	334	SINE (Alu)	ANKRD12	Intron	2
CP068260.2:11 073 229	317	SINE (Alu)	PIEZO2	Intron	1
CP068260.2:11 651 340	412	SINE (Alu)	LINC01255	Promoter	1
CP068260.2:11 651 340	412	SINE (Alu)	LINC01255	Intron	1
CP068260.2:27 152 079	317	SINE (Alu)	CHST9	Intron	2
CP068260.2:35 273 621	317	SINE (Alu)	MAPRE2	Intron	2
CP068260.2:45 956 220	79	SINE (Alu)	LOC105372093	Intron	2
CP068260.2:49 775 450	48	Retroposon (SVA)	LIPG	Intron	1
CP068260.2:50 011 675	175	Retroposon (SVA)	ACAA2	Intron	2
CP068260.2:50 011 874	176	Retroposon (SVA)	ACAA2	Intron	1
CP068260.2:52 608 255	321	SINE (Alu)	DCC	Intron	2
CP068260.2:53 663 279	320	SINE (Alu)	DCC	Intron	2
CP068260.2:55 681 933	319	SINE (Alu)	MIR4529	Promoter	2
CP068260.2:55 681 933	319	SINE (Alu)	TCF4-AS1	Intron	2
CP068260.2:56 003 042	326	SINE (Alu)	LOC105372130	Intron	2
CP068260.2:56 891 790	330	SINE (Alu)	WDR7	Intron	2
CP068260.2:57 843 094	101	LTR (ERV1)	ATP8B1-AS1	Intron	1
CP068260.2:57 843 462	203	LTR (ERV1)	ATP8B1-AS1	Intron	1
CP068260.2:57 914 128	143	SINE (Alu)	ATP8B1	Intron	2
CP068260.2:62 249 430	314	SINE (Alu)	PIGN	Intron	2
CP068260.2:66 072 639	337	SINE (Alu)	CDH7	Intron	2
CP068260.2:69 709 407	313	SINE (Alu)	DOK6	Intron	2
CP068260.2:70 644 924	312	SINE (Alu)	RPS2P6	Promoter	2
CP068260.2:70 644 924	312	SINE (Alu)	LOC124908034	Intron	2
CP068260.2:71 698 063	52	LINE (L1)	LOC107985179	Intron	2
CP068260.2:74 496 908	63	LINE (L2)	CYB5A	Intron	1
CP068261.2:2 178 843	134	SINE (Alu)	SMG6	Intron	2
CP068261.2:3 433 087	132	SINE (Alu)	TRPV3	Intron	2
CP068261.2:10 207 978	330	SINE (Alu)	LOC107985004	Intron	1
CP068261.2:13 440 691	297	SINE (Alu)	HS3ST3A1	Intron	1
CP068261.2:16 232 917	317	SINE (Alu)	PIGL	Intron	2
CP068261.2:19 987 007	2 668	Retroposon (SVA)	SPECC1	Intron	1
CP068261.2:20 934 063	96	Retroposon (SVA)	LOC124900389	Intron	1
CP068261.2:38 008 694	192	SINE (Alu)	AATF	Intron	2
CP068261.2:42 963 138	105	SINE (Alu)	DHX58	Intron	2
CP068261.2:45 034 218	255	Retroposon (SVA)	ASB16-AS1	Intron	2
CP068261.2:49 291 096	323	SINE (Alu)	SKAP1	Intron	2
CP068261.2:49 989 170	224	Retroposon (SVA)	B4GALNT2	Intron	2
CP068261.2:52 840 126	314	SINE (Alu)	CA10	Intron	2
CP068261.2:59 594 282	71	LINE (L1)	RAD51C	Intron	1
CP068261.2:61 447 465	325	SINE (Alu)	LINC01999	Intron	2
CP068261.2:69 968 391	311	SINE (Alu)	ABCA6	Intron	2
CP068261.2:74 299 029	163	SINE (Alu)	SDK2	Intron	1
CP068261.2:74 299 196	166	SINE (Alu)	SDK2	Intron	1
CP068261.2:75 514 650	307	SINE (Alu)	CD300E	Promoter	2
CP068261.2:75 514 650	307	SINE (Alu)	LOC101928343	Intron	2
CP068261.2:75 935 935	315	SINE (Alu)	KCTD2	Intron	2
CP068261.2:76 696 269	95	SINE (Alu)	UNK	Intron	2
CP068261.2:78 886 239	313	SINE (Alu)	TNRC6C	Intron	2
CP068261.2:79 403 508	181	SINE (Alu)	DNAH17	Intron	2
CP068261.2:82 055 352	326	SINE (Alu)	AATK	Intron	2
CP068261.2:82 527 912	322	SINE (Alu)	NPLOC4	Promoter	2
CP068261.2:82 527 912	322	SINE (Alu)	NPLOC4	Intron	2
CP068261.2:83 676 846	1 409	Retroposon (SVA)	TBCD	Intron	2
CP068261.2:455 384	96	Retroposon (SVA)	VPS53	Intron	2
CP068261.2:718 177	313	SINE (Alu)	NXN	Intron	2
CP068261.2:799 798	134	SINE (Alu)	NXN	Intron	2
CP068262.2:5 324 686	317	SINE (Alu)	RBFOX1	Intron	2
CP068262.2:6 773 894	1 405	LINE (L1)	RBFOX1	Intron	1
CP068262.2:11 372 328	118	Retroposon (SVA)	LOC105371082	Intron	2
CP068262.2:11 372 367	294	Retroposon (SVA)	LOC105371082	Intron	2
CP068262.2:15 116 749	85	SINE (Alu)	PDXDC1	Intron	2
CP068262.2:18 253 306	134	SINE (Alu)	LOC105376751	Intron	2
CP068262.2:19 149 959	345	SINE (Alu)	SYT17	Intron	2
CP068262.2:20 697 234	328	SINE (Alu)	ACSM3	Intron	2
CP068262.2:21 163 027	321	SINE (Alu)	LOC105371123	Intron	2
CP068262.2:22 366 704	185	SINE (Alu)	NPIPB4	Intron	1
CP068262.2:22 425 396	310	SINE (Alu)	LOC105371126	Intron	2
CP068262.2:24 129 334	325	SINE (Alu)	PRKCB	Intron	2
CP068262.2:25 129 781	63	LINE (L2)	SLC5A11	Intron	1
CP068262.2:28 953 796	65	SINE (Alu)	LOC124903790	Promoter	2
CP068262.2:34 910 910	138	SINE (Alu)	TUBB8P11	Intron	1
CP068262.2:63 015 018	315	SINE (Alu)	RSPRY1	Intron	2
CP068262.2:64 052 598	317	SINE (Alu)	CFAP263	Intron	1
CP068262.2:64 555 275	134	SINE (Alu)	LOC107984867	Intron	2
CP068262.2:64 559 334	55	SINE (Alu)	LOC107984867	Intron	2
CP068262.2:67 801 060	329	SINE (Alu)	CDH8	Intron	2
CP068262.2:75 622 940	53	SINE (Alu)	WWP2	Intron	2
CP068262.2:81 108 232	76	LINE (L1)	ZNRF1	Intron	2
CP068262.2:81 211 804	307	SINE (Alu)	ZFP1	Intron	2
CP068262.2:83 862 434	133	SINE (Alu)	VAT1L	Intron	2
CP068262.2:84 715 226	326	SINE (Alu)	WWOX	Intron	2
CP068262.2:88 943 277	312	SINE (Alu)	CDH13	Intron	2
CP068262.2:94 530 929	337	SINE (Alu)	ZFPM1	Intron	1
CP068262.2:95 928 542	311	SINE (Alu)	SPIRE2	Intron	1
CP068262.2:480 325	311	SINE (Alu)	RAB11FIP3	Intron	2
CP068263.2:21 696 325	308	SINE (Alu)	LOC107984787	Intron	2
CP068263.2:23 495 786	56	LTR (ERV1)	ATP10A	Intron	2
CP068263.2:23 497 425	72	LTR (ERV1)	ATP10A	Intron	2
CP068263.2:23 498 708	52	LTR (ERV1)	ATP10A	Intron	1
CP068263.2:23 499 008	52	LTR (ERV1)	ATP10A	Intron	1
CP068263.2:25 263 076	324	SINE (Alu)	GABRG3	Intron	2
CP068263.2:25 672 331	121	SINE (Alu)	OCA2	Intron	2
CP068263.2:25 673 162	393	LINE (L1)	OCA2	Intron	2
CP068263.2:31 536 137	6 041	LINE (L1)	RYR3	Intron	2
CP068263.2:32 986 718	317	SINE (Alu)	DPH6	Intron	2
CP068263.2:33 461 727	125	Retroposon (SVA)	DPH6-DT	Intron	2
CP068263.2:33 609 416	309	SINE (Alu)	DPH6-DT	Intron	2
CP068263.2:35 220 952	666	LINE (L1)	LOC105370772	Intron	1
CP068263.2:36 780 040	352	SINE (Alu)	LOC105370777	Intron	2
CP068263.2:38 614 143	315	SINE (Alu)	DNAJC17	Promoter	2
CP068263.2:38 614 143	315	SINE (Alu)	ZFYVE19	Intron	2
CP068263.2:39 236 166	305	SINE (Alu)	RTF1	Intron	2
CP068263.2:40 270 159	75	SINE (Alu)	ZNF106	Intron	1
CP068263.2:43 086 082	143	SINE (Alu)	SLC28A2-AS1	Intron	2
CP068263.2:43 583 928	335	SINE (Alu)	LOC105370802	Intron	2
CP068263.2:43 641 520	324	SINE (Alu)	LOC105370802	Intron	2
CP068263.2:45 153 207	326	SINE (Alu)	SEMA6D	Intron	2
CP068263.2:47 125 591	311	SINE (Alu)	GALK2	Intron	2
CP068263.2:50 041 588	331	SINE (Alu)	LOC105370820	Intron	2
CP068263.2:53 913 589	228	Retroposon (SVA)	LOC124903498	Intron	1
CP068263.2:53 913 807	50	Retroposon (SVA)	LOC124903498	Intron	1
CP068263.2:55 792 313	104	SINE (Alu)	ALDH1A2	Intron	2
CP068263.2:56 106 612	319	SINE (Alu)	LOC124907518	Intron	2
CP068263.2:58 168 194	306	SINE (Alu)	ANXA2	Intron	2
CP068263.2:58 727 456	317	SINE (Alu)	RORA	Intron	2
CP068263.2:64 043 253	324	SINE (Alu)	MEGF11	Intron	2
CP068263.2:64 197 247	322	SINE (Alu)	TIPIN	Intron	2
CP068263.2:64 381 413	200	SINE (Alu)	LCTL	Intron	2
CP068263.2:64 824 384	330	SINE (Alu)	SMAD3-DT	Intron	2
CP068263.2:65 174 494	317	SINE (Alu)	IQCH	Intron	2
CP068263.2:71 508 181	321	SINE (Alu)	CD276	Intron	2
CP068263.2:73 374 856	144	Retroposon (SVA)	PTPN9	Intron	2
CP068263.2:76 507 733	317	SINE (Alu)	CHRNB4	Intron	2
CP068263.2:77 366 877	313	SINE (Alu)	LOC105370919	Promoter	2
CP068263.2:85 217 623	159	SINE (Alu)	LOC102724465	Intron	2
CP068263.2:92 039 791	305	SINE (Alu)	MCTP2	Intron	2
CP068263.2:93 349 076	291	SINE (Alu)	LOC105370995	Intron	2
CP068263.2:95 035 913	127	LINE (L1)	LINC02253	Intron	1
CP068263.2:95 045 999	328	SINE (Alu)	LINC02253	Intron	2
CP068263.2:96 121 828	565	LINE (L1)	LINC02351	Intron	2
CP068263.2:98 667 707	310	SINE (Alu)	ALDH1A3	Intron	2
CP068264.2:13 913 770	329	SINE (Alu)	OR11H2	Promoter	2
CP068264.2:14 703 899	172	Retroposon (SVA)	RNASE10	Intron	1
CP068264.2:15 771 109	327	SINE (Alu)	OR10G3	Intron	2
CP068264.2:18 051 022	79	LTR (ERV1)	LINC00596	Intron	2
CP068264.2:18 410 919	164	SINE (Alu)	CHMP4A	Intron	2
CP068264.2:24 879 419	6 122	LINE (L1)	SCFD1	Intron	1
CP068264.2:29 128 780	87	SINE (Alu)	SRP54-AS1	Intron	2
CP068264.2:29 131 238	313	SINE (Alu)	SRP54-AS1	Intron	2
CP068264.2:32 463 591	325	SINE (Alu)	LOC112268136	Intron	2
CP068264.2:45 642 552	6 031	LINE (L1)	SETP2	Promoter	1
CP068264.2:45 642 552	6 031	LINE (L1)	FRMD6	Intron	1
CP068264.2:53 559 568	132	LINE (L1)	DAAM1	Intron	2
CP068264.2:55 990 365	336	SINE (Alu)	SNAPC1	Intron	2
CP068264.2:65 176 814	327	SINE (Alu)	PCNX1	Intron	2
CP068264.2:65 218 922	331	SINE (Alu)	PCNX1	Intron	2
CP068264.2:67 743 059	1 408	LTR (ERV1)	ACOT1	Intron	1
CP068264.2:67 743 506	730	LTR (ERV1)	ACOT1	Intron	1
CP068264.2:67 764 612	311	SINE (Alu)	HEATR4	Intron	2
CP068264.2:67 927 366	317	SINE (Alu)	MIDEAS	Intron	2
CP068264.2:87 596 458	314	SINE (Alu)	UNC79	Intron	2
CP068264.2:94 611 756	326	SINE (Alu)	WDR25	Intron	2
CP068265.2:5 252 040	71	LINE (L1)	LOC124907012	Intron	2
CP068265.2:13 715 682	196	SINE (Alu)	FAM230C	Intron	2
CP068265.2:19 029 113	304	SINE (Alu)	ZMYM5	Intron	2
CP068265.2:20 642 557	145	Retroposon (SVA)	ZDHHC20	Intron	2
CP068265.2:20 642 723	76	Retroposon (SVA)	ZDHHC20	Intron	2
CP068265.2:28 214 242	66	LTR (ERV1)	MTUS2	Intron	2
CP068265.2:28 603 953	324	SINE (Alu)	MTUS2	Intron	2
CP068265.2:29 823 844	327	SINE (Alu)	HMGB1	Intron	2
CP068265.2:33 759 344	76	Retroposon (SVA)	LINC02343	Intron	1
CP068265.2:33 759 648	275	Retroposon (SVA)	LINC02343	Intron	1
CP068265.2:38 095 120	313	SINE (Alu)	FREM2	Intron	2
CP068265.2:40 868 719	2 724	Retroposon (SVA)	VWA8	Intron	1
CP068265.2:41 100 875	77	Retroposon (SVA)	VWA8	Intron	2
CP068265.2:42 185 736	1 644	Retroposon (SVA)	EPSTI1	Intron	2
CP068265.2:44 915 232	314	SINE (Alu)	LINC01055	Intron	2
CP068265.2:45 366 990	318	SINE (Alu)	LCP1	Intron	2
CP068265.2:45 778 730	322	SINE (Alu)	LRCH1	Intron	2
CP068265.2:47 438 605	306	SINE (Alu)	LOC105370198	Intron	2
CP068265.2:57 403 474	309	SINE (Alu)	LINC02338	Intron	2
CP068265.2:77 302 799	315	SINE (Alu)	OBI1-AS1	Intron	2
CP068265.2:78 735 172	315	SINE (Alu)	NDFIP2	Intron	2
CP068265.2:89 698 651	101	LTR (ERV1)	LINC01049	Intron	2
CP068265.2:91 376 118	321	SINE (Alu)	GPC5	Intron	2
CP068265.2:92 657 341	318	SINE (Alu)	GPC6	Intron	2
CP068265.2:98 181 350	134	SINE (Alu)	DOCK9	Intron	2
CP068265.2:100 191 900	100	LTR (ERV1)	NALCN-AS1	Intron	2
CP068265.2:106 498 472	321	SINE (Alu)	NALF1	Intron	2
CP068265.2:107 842 850	61	LINE (L1)	MYO16	Intron	2
CP068265.2:109 388 985	314	SINE (Alu)	COL4A1	Intron	2
CP068265.2:109 862 683	128	LTR (ERV1)	NAXD	Intron	2
CP068265.2:110 189 655	246	SINE (Alu)	LOC105370364	Intron	2
CP068265.2:112 115 809	312	SINE (Alu)	ATP11A	Intron	2
CP068266.2:1 976 788	318	SINE (Alu)	CACNA1C	Intron	2
CP068266.2:3 101 639	127	Retroposon (SVA)	TSPAN9	Intron	2
CP068266.2:4 668 545	309	SINE (Alu)	NDUFA9	Intron	2
CP068266.2:4 741 668	215	SINE (Alu)	GALNT8	Intron	2
CP068266.2:5 668 028	308	SINE (Alu)	ANO2	Intron	2
CP068266.2:6 807 792	255	SINE (Alu)	CD4	Intron	1
CP068266.2:7 213 258	93	Retroposon (SVA)	PEX5	Intron	2
CP068266.2:7 830 662	336	SINE (Alu)	SLC2A14	Intron	2
CP068266.2:8 456 751	319	SINE (Alu)	CLEC6A	Intron	2
CP068266.2:10 533 754	173	LTR (ERV1)	STYK1	Intron	2
CP068266.2:10 960 227	331	SINE (Alu)	PRH1-PRR4	Intron	1
CP068266.2:10 975 580	312	SINE (Alu)	PRH1-PRR4	Intron	1
CP068266.2:12 283 010	97	Retroposon (SVA)	BORCS5	Intron	2
CP068266.2:12 325 999	310	SINE (Alu)	BORCS5	Intron	1
CP068266.2:12 654 312	1 782	LINE (L1)	APOLD1	Intron	2
CP068266.2:14 829 038	325	SINE (Alu)	ARHGDIB	Promoter	2
CP068266.2:14 829 038	325	SINE (Alu)	ARHGDIB	Intron	2
CP068266.2:21 811 737	333	SINE (Alu)	ABCC9	Intron	2
CP068266.2:24 707 017	309	SINE (Alu)	BCAT1	Intron	2
CP068266.2:26 657 326	587	Retroposon (SVA)	ITPR2	Intron	2
CP068266.2:26 657 354	158	Retroposon (SVA)	ITPR2	Intron	1
CP068266.2:26 657 772	149	Retroposon (SVA)	ITPR2	Intron	2
CP068266.2:27 239 765	329	SINE (Alu)	BMAL2	Intron	2
CP068266.2:27 583 597	314	SINE (Alu)	MRPS35	Intron	2
CP068266.2:29 543 251	313	SINE (Alu)	TMTC1	Intron	2
CP068266.2:40 231 437	326	SINE (Alu)	LRRK2	Intron	2
CP068266.2:41 239 964	345	LINE (L1)	PDZRN4	Intron	2
CP068266.2:42 186 236	97	Retroposon (SVA)	YAF2	Intron	2
CP068266.2:44 984 372	311	SINE (Alu)	DBX2	Intron	2
CP068266.2:51 442 071	342	SINE (Alu)	SLC4A8	Intron	2
CP068266.2:53 648 538	317	SINE (Alu)	ATP5MC2	Promoter	1
CP068266.2:62 002 307	319	SINE (Alu)	TAFA2	Intron	2
CP068266.2:62 465 027	321	SINE (Alu)	MON2	Intron	2
CP068266.2:64 720 062	176	SINE (Alu)	GNS	Intron	2
CP068266.2:66 492 045	313	SINE (Alu)	GRIP1	Intron	1
CP068266.2:66 597 279	324	SINE (Alu)	GRIP1	Intron	2
CP068266.2:77 981 522	327	SINE (Alu)	NAV3	Intron	2
CP068266.2:80 900 281	323	SINE (Alu)	LIN7A	Intron	2
CP068266.2:94 256 702	321	SINE (Alu)	PLXNC1	Intron	2
CP068266.2:96 285 798	317	SINE (Alu)	CDK17	Intron	2
CP068266.2:101 881 504	99	SINE (Alu)	DRAM1	Intron	2
CP068266.2:105 341 485	318	SINE (Alu)	LOC105369957	Intron	2
CP068266.2:106 691 957	312	SINE (Alu)	RFX4	Intron	2
CP068266.2:112 316 213	349	SINE (Alu)	HECTD4	Intron	2
CP068266.2:113 848 347	147	Retroposon (SVA)	RBM19	Intron	1
CP068266.2:115 271 606	312	SINE (Alu)	LOC124903082	Intron	2
CP068266.2:117 736 378	3 762	LINE (L1)	KSR2	Intron	2
CP068266.2:121 878 118	194	SINE (Alu)	HPD	Intron	2
CP068266.2:121 990 187	461	Retroposon (SVA)	CFAP251	Intron	2
CP068266.2:122 233 522	78	SINE (Alu)	VPS33A	Intron	2
CP068266.2:122 704 283	49	Retroposon (SVA)	LOC124906985	Intron	1
CP068266.2:124 855 294	309	SINE (Alu)	SCARB1	Intron	2
CP068266.2:126 429 324	314	SINE (Alu)	LINC02825	Intron	2
CP068266.2:126 723 342	316	SINE (Alu)	LINC02824	Intron	2
CP068266.2:129 608 033	326	SINE (Alu)	TMEM132D	Intron	2
CP068266.2:420 942	2 487	Retroposon (SVA)	CCDC77	Intron	2
CP068267.2:5 010 997	301	SINE (Alu)	MMP26	Intron	2
CP068267.2:7 649 824	320	SINE (Alu)	LOC105376535	Promoter	2
CP068267.2:7 649 824	320	SINE (Alu)	PPFIBP2	Intron	2
CP068267.2:8 949 899	317	SINE (Alu)	DENND2B	Intron	2
CP068267.2:9 857 725	318	SINE (Alu)	SBF2-AS1	Intron	2
CP068267.2:14 573 741	324	SINE (Alu)	COPB1	Intron	2
CP068267.2:17 004 803	253	Retroposon (SVA)	PLEKHA7	Intron	2
CP068267.2:17 004 834	77	Retroposon (SVA)	PLEKHA7	Intron	2
CP068267.2:19 481 274	324	SINE (Alu)	NAV2	Intron	2
CP068267.2:22 361 771	123	LINE (L1)	ANO5	Intron	2
CP068267.2:24 902 348	319	SINE (Alu)	LUZP2	Intron	2
CP068267.2:25 682 675	345	SINE (Alu)	LINC02699	Intron	2
CP068267.2:26 412 603	302	SINE (Alu)	ANO3	Intron	2
CP068267.2:26 799 043	98	SINE (Alu)	ANO3	Intron	2
CP068267.2:27 776 457	330	LTR (ERV1)	BDNF-AS	Intron	2
CP068267.2:31 266 980	315	SINE (Alu)	DCDC1	Intron	2
CP068267.2:33 652 002	320	SINE (Alu)	KIAA1549L	Intron	2
CP068267.2:34 364 862	325	SINE (Alu)	ABTB2	Intron	1
CP068267.2:34 364 966	324	SINE (Alu)	ABTB2	Intron	1
CP068267.2:36 680 096	6 064	LINE (L1)	RAG1	Intron	2
CP068267.2:42 181 175	327	SINE (Alu)	LINC02745	Intron	2
CP068267.2:47 253 972	175	Retroposon (SVA)	CSTPP1	Intron	2
CP068267.2:49 811 499	302	SINE (Alu)	GRM5P1	Intron	2
CP068267.2:60 485 034	79	LINE (L1)	MS4A13	Intron	2
CP068267.2:63 882 701	259	LINE (L1)	MARK2	Intron	2
CP068267.2:74 199 847	264	SINE (Alu)	P4HA3	Intron	1
CP068267.2:75 339 543	77	Retroposon (SVA)	RPS3	Intron	2
CP068267.2:77 028 418	177	Retroposon (SVA)	CAPN5	Intron	2
CP068267.2:78 812 830	73	Retroposon (SVA)	TENM4	Intron	1
CP068267.2:78 812 989	76	Retroposon (SVA)	TENM4	Intron	1
CP068267.2:79 061 406	56	LTR (ERVL)	TENM4	Intron	2
CP068267.2:86 426 805	320	SINE (Alu)	ME3	Intron	2
CP068267.2:89 394 639	338	SINE (Alu)	NOX4	Intron	2
CP068267.2:89 743 826	56	LINE (L1)	LOC642414	Intron	2
CP068267.2:93 292 452	317	SINE (Alu)	DEUP1	Intron	2
CP068267.2:101 050 609	317	SINE (Alu)	PGR	Intron	2
CP068267.2:101 555 768	328	SINE (Alu)	TRPC6	Intron	2
CP068267.2:102 644 466	317	SINE (Alu)	MMP20-AS1	Intron	2
CP068267.2:104 919 972	320	SINE (Alu)	CASP4LP	Intron	2
CP068267.2:106 732 181	290	SINE (Alu)	GUCY1A2	Intron	2
CP068267.2:112 224 222	1 288	LINE (L1)	BCO2	Intron	2
CP068267.2:114 826 733	315	SINE (Alu)	LOC105369506	Intron	2
CP068267.2:116 334 364	123	SINE (Alu)	LOC124902834	Promoter	2
CP068267.2:118 715 549	133	SINE (Alu)	LOC105369519	Intron	2
CP068267.2:125 617 715	2 805	Retroposon (SVA)	STT3A-AS1	Intron	2
CP068267.2:127 104 382	326	SINE (Alu)	LOC101929473	Intron	2
CP068267.2:130 127 234	449	Retroposon (SVA)	APLP2	Intron	2
CP068267.2:473 330	320	SINE (Alu)	ANO9	Intron	2
CP068268.2:1 248 623	326	SINE (Alu)	ADARB2	Intron	2
CP068268.2:3 530 702	314	SINE (Alu)	LOC105376360	Intron	2
CP068268.2:4 863 989	71	LINE (L1)	AKR1E2	Intron	2
CP068268.2:9 873 493	325	SINE (Alu)	LINC02663	Intron	2
CP068268.2:10 462 177	323	SINE (Alu)	CELF2-DT	Intron	2
CP068268.2:10 778 281	169	SINE (Alu)	CELF2	Intron	2
CP068268.2:14 722 879	64	LINE (L1)	FAM107B	Intron	2
CP068268.2:19 127 412	333	SINE (Alu)	MALRD1	Intron	1
CP068268.2:19 280 911	315	SINE (Alu)	MALRD1	Intron	2
CP068268.2:19 517 007	295	SINE (Alu)	MALRD1	Intron	2
CP068268.2:24 675 533	144	Retroposon (SVA)	ARHGAP21	Intron	2
CP068268.2:26 033 549	330	SINE (Alu)	MYO3A	Intron	2
CP068268.2:26 090 723	316	SINE (Alu)	MYO3A	Intron	2
CP068268.2:27 326 361	448	Retroposon (SVA)	ODAD2P1	Intron	2
CP068268.2:29 454 890	561	LINE (L1)	SVIL-AS1	Intron	2
CP068268.2:30 638 185	125	SINE (Alu)	LYZL2	Intron	2
CP068268.2:37 665 828	301	SINE (Alu)	LOC102724533	Intron	2
CP068268.2:38 027 057	157	SINE (Alu)	ZNF25-DT	Intron	2
CP068268.2:43 632 105	324	SINE (Alu)	LOC105378269	Promoter	2
CP068268.2:47 533 855	321	SINE (Alu)	SHLD2P1	Intron	2
CP068268.2:49 919 156	314	SINE (Alu)	VSTM4	Intron	2
CP068268.2:53 574 545	70	SINE (Alu)	LOC105378305	Intron	2
CP068268.2:55 591 289	514	LINE (L1)	PCDH15	Intron	2
CP068268.2:55 788 354	125	LINE (L1)	PCDH15	Intron	1
CP068268.2:62 840 680	169	SINE (Alu)	ARID5B	Intron	2
CP068268.2:67 152 644	246	SINE (Alu)	CTNNA3	Intron	2
CP068268.2:67 440 301	328	SINE (Alu)	CTNNA3	Intron	2
CP068268.2:70 106 720	314	SINE (Alu)	HKDC1	Intron	2
CP068268.2:71 715 465	315	SINE (Alu)	SGPL1	Intron	2
CP068268.2:72 303 748	326	SINE (Alu)	CDH23	Intron	2
CP068268.2:76 207 681	49	Retroposon (SVA)	ZNF503-AS1	Intron	2
CP068268.2:83 352 109	485	Retroposon (SVA)	NRG3	Intron	2
CP068268.2:85 102 012	318	SINE (Alu)	LRIT2	Intron	2
CP068268.2:87 084 164	304	SINE (Alu)	GRID1	Intron	2
CP068268.2:87 790 483	323	SINE (Alu)	BMPR1A	Intron	2
CP068268.2:88 939 111	325	SINE (Alu)	LOC105378414	Intron	2
CP068268.2:91 338 874	313	SINE (Alu)	LINC02653	Intron	2
CP068268.2:91 351 314	316	SINE (Alu)	LINC02653	Intron	2
CP068268.2:95 402 253	3 279	Retroposon (SVA)	TBC1D12	Intron	2
CP068268.2:96 787 855	315	SINE (Alu)	CC2D2B	Intron	2
CP068268.2:99 145 741	328	SINE (Alu)	LOXL4	Intron	1
CP068268.2:99 427 122	154	SINE (Alu)	HPSE2	Intron	2
CP068268.2:100 722 705	224	Retroposon (SVA)	ABCC2	Intron	2
CP068268.2:100 876 071	321	SINE (Alu)	DNMBP	Intron	2
CP068268.2:102 885 604	319	SINE (Alu)	ARMH3	Intron	2
CP068268.2:102 921 235	141	Retroposon (SVA)	ARMH3	Intron	2
CP068268.2:104 015 839	229	Retroposon (SVA)	NT5C2	Intron	2
CP068268.2:104 225 372	312	SINE (Alu)	PCGF6	Intron	2
CP068268.2:105 697 311	328	SINE (Alu)	SORCS3	Intron	2
CP068268.2:116 140 819	315	SINE (Alu)	ATRNL1	Intron	2
CP068268.2:119 905 022	319	SINE (Alu)	LINC03036	Intron	2
CP068268.2:121 742 443	61	LTR (ERV1)	WDR11-DT	Intron	2
CP068268.2:131 025 575	97	LINE (L1)	C10orf143	Intron	2
CP068268.2:131 183 783	310	SINE (Alu)	LOC124900609	Intron	2
CP068269.2:4 819 340	287	SINE (Alu)	RCL1	Intron	2
CP068269.2:5 439 269	264	Retroposon (SVA)	PLGRKT	Intron	1
CP068269.2:6 295 538	714	LINE (L1)	LOC107987046	Intron	2
CP068269.2:6 804 463	98	Retroposon (SVA)	KDM4C	Intron	2
CP068269.2:6 885 377	311	SINE (Alu)	KDM4C	Intron	2
CP068269.2:8 652 319	274	SINE (Alu)	PTPRD	Intron	2
CP068269.2:9 145 491	320	SINE (Alu)	PTPRD	Intron	2
CP068269.2:14 642 210	104	LINE (L1)	ZDHHC21	Intron	2
CP068269.2:14 887 218	320	SINE (Alu)	FREM1	Intron	2
CP068269.2:16 401 598	326	SINE (Alu)	LOC124902125	Intron	2
CP068269.2:18 765 099	294	SINE (Alu)	ADAMTSL1	Intron	2
CP068269.2:22 072 341	76	SINE (Alu)	CDKN2B-AS1	Intron	2
CP068269.2:26 487 284	119	SINE (Alu)	LOC105375999	Intron	2
CP068269.2:34 293 360	333	SINE (Alu)	KIF24	Intron	2
CP068269.2:34 956 175	131	Retroposon (SVA)	PHF24	Intron	2
CP068269.2:35 038 160	64	LINE (L1)	LOC105376025	Intron	2
CP068269.2:76 857 935	68	LINE (L1)	LOC124906851	Intron	2
CP068269.2:81 331 129	316	SINE (Alu)	TJP2	Intron	1
CP068269.2:82 329 266	6 065	LINE (L1)	MAMDC2	Intron	2
CP068269.2:83 123 292	132	SINE (Alu)	TRPM3	Intron	2
CP068269.2:84 767 523	314	SINE (Alu)	TMC1	Intron	2
CP068269.2:85 078 955	343	SINE (Alu)	ALDH1A1	Intron	2
CP068269.2:88 222 509	405	Retroposon (SVA)	PCSK5	Intron	2
CP068269.2:88 992 783	329	SINE (Alu)	PRUNE2	Intron	2
CP068269.2:89 451 562	321	SINE (Alu)	VPS13A	Intron	2
CP068269.2:103 462 337	731	LINE (L1)	AUH	Intron	2
CP068269.2:104 686 550	320	SINE (Alu)	CENPP	Intron	2
CP068269.2:104 997 508	136	Retroposon (SVA)	ANKRD19P	Intron	1
CP068269.2:106 136 047	252	SINE (Alu)	LOC124902216	Intron	2
CP068269.2:106 794 432	313	SINE (Alu)	FBP1	Intron	2
CP068269.2:112 443 781	81	SINE (Alu)	INVS	Intron	2
CP068269.2:113 619 696	310	SINE (Alu)	LOC105376184	Intron	2
CP068269.2:115 487 860	191	SINE (Alu)	LINC01492	Intron	1
CP068269.2:119 632 662	60	SINE (Alu)	LINC01509	Intron	2
CP068269.2:124 311 520	314	SINE (Alu)	SUSD1	Intron	2
CP068269.2:124 685 981	227	Retroposon (SVA)	KIAA1958	Intron	1
CP068269.2:124 686 240	177	Retroposon (SVA)	KIAA1958	Intron	1
CP068269.2:125 406 178	320	SINE (Alu)	FKBP15	Intron	2
CP068269.2:141 137 397	133	SINE (Alu)	PHYHD1	Intron	2
CP068269.2:144 740 730	2 976	LINE (L1)	CFAP77	Intron	2
CP068269.2:146 110 857	226	Retroposon (SVA)	VAV2	Intron	1
CP068269.2:150 489 512	227	LINE (L1)	FAM157B	Intron	1
CP068269.2:376 471	59	SINE (Alu)	DOCK8	Intron	1
CP068269.2:863 345	114	Retroposon (SVA)	DMRT1	Intron	2
CP068270.2:3 524 025	325	SINE (Alu)	CSMD1	Intron	2
CP068270.2:5 725 123	607	LINE (L1)	LOC105377795	Intron	2
CP068270.2:6 485 699	318	SINE (Alu)	AGPAT5	Intron	2
CP068270.2:10 681 512	321	SINE (Alu)	ERI1	Intron	2
CP068270.2:12 907 672	329	SINE (Alu)	LOC729732	Intron	2
CP068270.2:13 365 524	334	SINE (Alu)	DLC1	Intron	2
CP068270.2:15 957 256	322	SINE (Alu)	TUSC3	Intron	1
CP068270.2:17 372 585	319	SINE (Alu)	MICU3	Intron	2
CP068270.2:17 675 688	323	SINE (Alu)	MTMR7	Intron	2
CP068270.2:19 059 693	972	LTR (ERVK)	PSD3	Intron	2
CP068270.2:25 737 763	49	SINE (Alu)	CDCA2	Intron	2
CP068270.2:26 048 555	112	LINE (L1)	LOC107986933	Intron	2
CP068270.2:28 963 145	129	LINE (L1)	EXTL3	Promoter	2
CP068270.2:28 963 145	129	LINE (L1)	EXTL3	Intron	2
CP068270.2:32 796 257	196	LINE (L1)	NRG1	Intron	2
CP068270.2:34 175 409	292	SINE (Alu)	LOC105379364	Intron	2
CP068270.2:40 852 584	6 101	LINE (L1)	ZMAT4	Intron	2
CP068270.2:42 456 695	310	SINE (Alu)	PLAT	Intron	2
CP068270.2:48 487 704	321	SINE (Alu)	LOC107986941	Intron	2
CP068270.2:54 436 680	313	SINE (Alu)	LYPLA1-TCEA1	Intron	2
CP068270.2:55 498 084	333	SINE (Alu)	XKR4	Intron	2
CP068270.2:55 866 232	315	SINE (Alu)	XKR4	Intron	2
CP068270.2:60 716 533	315	SINE (Alu)	LOC105375864	Intron	2
CP068270.2:61 037 962	321	SINE (Alu)	RAB2A	Intron	2
CP068270.2:66 658 366	175	Retroposon (SVA)	LOC102724687	Intron	1
CP068270.2:73 800 713	326	SINE (Alu)	LOC105375899	Promoter	2
CP068270.2:74 052 032	170	SINE (Alu)	STAU2	Intron	2
CP068270.2:74 150 241	327	SINE (Alu)	STAU2	Intron	2
CP068270.2:76 854 880	1 039	LINE (L1)	LINC01111	Intron	2
CP068270.2:94 275 050	314	SINE (Alu)	LINC02906	Intron	2
CP068270.2:96 503 803	231	SINE (Alu)	CFAP418-AS1	Intron	2
CP068270.2:96 580 482	315	SINE (Alu)	CFAP418-AS1	Intron	1
CP068270.2:98 461 839	321	SINE (Alu)	LOC101927066	Intron	2
CP068270.2:99 578 329	325	SINE (Alu)	STK3	Intron	2
CP068270.2:106 015 693	335	SINE (Alu)	LOC105375694	Intron	2
CP068270.2:106 786 176	330	SINE (Alu)	ZFPM2	Intron	2
CP068270.2:107 627 313	323	SINE (Alu)	OXR1	Intron	2
CP068270.2:107 844 447	325	SINE (Alu)	OXR1	Intron	2
CP068270.2:110 465 615	302	SINE (Alu)	ENY2	Intron	2
CP068270.2:116 603 471	327	SINE (Alu)	TRPS1	Intron	2
CP068270.2:119 563 257	309	SINE (Alu)	SAMD12	Intron	2
CP068270.2:121 797 875	319	SINE (Alu)	SNTB1	Intron	1
CP068270.2:122 849 197	322	SINE (Alu)	LOC124906789	Intron	2
CP068270.2:123 646 343	311	SINE (Alu)	SMILR	Intron	2
CP068270.2:126 458 371	317	SINE (Alu)	NSMCE2	Intron	2
CP068270.2:132 282 389	311	SINE (Alu)	LOC105375760	Intron	2
CP068270.2:133 053 370	323	SINE (Alu)	EFR3A	Intron	2
CP068270.2:137 820 678	329	SINE (Alu)	LINC02055	Intron	2
CP068270.2:138 964 924	320	SINE (Alu)	LOC401478	Intron	2
CP068271.2:2 382 179	77	Retroposon (SVA)	SNX8	Intron	2
CP068271.2:2 674 652	107	SINE (Alu)	IQCE	Intron	2
CP068271.2:6 790 042	96	Retroposon (SVA)	LOC124901583	Intron	2
CP068271.2:8 616 432	317	SINE (Alu)	NXPH1	Intron	2
CP068271.2:14 540 334	319	SINE (Alu)	DGKB	Intron	2
CP068271.2:18 412 782	279	SINE (Alu)	HDAC9	Intron	2
CP068271.2:20 804 219	49	Retroposon (SVA)	ABCB5	Intron	1
CP068271.2:22 949 794	311	SINE (Alu)	TOMM7	Intron	2
CP068271.2:26 303 990	120	LINE (L1)	NFE2L3	Intron	2
CP068271.2:37 578 432	322	SINE (Alu)	ELMO1	Intron	2
CP068271.2:38 626 104	315	SINE (Alu)	AMPH	Intron	2
CP068271.2:38 630 323	336	SINE (Alu)	AMPH	Intron	2
CP068271.2:39 722 369	324	SINE (Alu)	YAE1-DT	Intron	2
CP068271.2:42 668 469	318	SINE (Alu)	LOC105375250	Promoter	2
CP068271.2:43 532 806	253	SINE (Alu)	HECW1	Intron	2
CP068271.2:45 911 341	325	SINE (Alu)	SEPTIN7P2	Intron	2
CP068271.2:48 018 075	321	SINE (Alu)	PKD1L1	Intron	2
CP068271.2:66 601 866	304	SINE (Alu)	ZNF92	Intron	1
CP068271.2:75 759 083	179	SINE (Alu)	GTF2IRD1	Intron	2
CP068271.2:77 895 803	300	SINE (Alu)	LINC03009	Intron	2
CP068271.2:79 582 546	322	SINE (Alu)	MAGI2	Intron	2
CP068271.2:83 623 827	326	SINE (Alu)	CACNA2D1	Intron	2
CP068271.2:84 052 406	316	SINE (Alu)	PCLO	Intron	2
CP068271.2:85 626 331	314	SINE (Alu)	SEMA3A	Intron	2
CP068271.2:86 363 451	307	SINE (Alu)	SEMA3D	Intron	2
CP068271.2:90 466 172	343	SINE (Alu)	ZNF804B	Intron	2
CP068271.2:91 220 124	318	SINE (Alu)	STEAP2-AS1	Intron	2
CP068271.2:91 992 917	206	Retroposon (SVA)	CDK14	Intron	2
CP068271.2:93 363 499	315	SINE (Alu)	CYP51A1	Intron	2
CP068271.2:96 385 565	328	SINE (Alu)	PPP1R9A	Intron	1
CP068271.2:96 708 060	292	SINE (Alu)	LOC107986823	Intron	2
CP068271.2:97 674 156	314	SINE (Alu)	LOC105375410	Intron	2
CP068271.2:98 667 753	315	SINE (Alu)	LOC105375416	Intron	2
CP068271.2:102 681 693	2 781	Retroposon (SVA)	COL26A1	Intron	2
CP068271.2:103 867 427	84	SINE (Alu)	POLR2J3-UPK3BL2	Intron	2
CP068271.2:104 162 973	334	SINE (Alu)	FAM185A	Intron	2
CP068271.2:106 264 512	103	SINE (Alu)	LOC101927902	Intron	2
CP068271.2:106 569 810	322	SINE (Alu)	SRPK2	Intron	2
CP068271.2:109 361 786	123	SINE (Alu)	LAMB4	Intron	1
CP068271.2:112 163 030	96	LINE (L1)	IMMP2L	Intron	2
CP068271.2:113 557 064	310	SINE (Alu)	ZNF277	Intron	2
CP068271.2:115 628 403	310	SINE (Alu)	FOXP2	Intron	2
CP068271.2:118 517 612	311	SINE (Alu)	ST7	Intron	2
CP068271.2:119 758 768	316	SINE (Alu)	LOC105375471	Intron	2
CP068271.2:126 270 363	316	SINE (Alu)	POT1-AS1	Intron	2
CP068271.2:126 339 967	165	LTR (ERVL)	POT1-AS1	Intron	2
CP068271.2:130 739 691	310	SINE (Alu)	AHCYL2	Intron	2
CP068271.2:132 092 197	152	SINE (Alu)	LOC105375508	Intron	2
CP068271.2:132 267 964	340	SINE (Alu)	LINC-PINT	Intron	2
CP068271.2:132 541 792	144	SINE (Alu)	MKLN1	Intron	2
CP068271.2:134 744 375	326	SINE (Alu)	EXOC4	Intron	2
CP068271.2:136 047 540	325	SINE (Alu)	LOC124901750	Intron	2
CP068271.2:136 812 007	334	SINE (Alu)	CNOT4	Intron	2
CP068271.2:138 459 440	318	SINE (Alu)	LOC349160	Intron	2
CP068271.2:140 191 659	282	SINE (Alu)	KIAA1549	Intron	2
CP068271.2:141 676 137	176	Retroposon (SVA)	SLC37A3	Intron	1
CP068271.2:141 676 145	213	Retroposon (SVA)	SLC37A3	Intron	1
CP068271.2:149 591 887	134	SINE (Alu)	CNTNAP2	Intron	2
CP068271.2:149 923 445	134	SINE (Alu)	CUL1	Intron	2
CP068271.2:150 303 197	308	SINE (Alu)	ZNF425	Intron	2
CP068271.2:151 854 517	90	SINE (Alu)	LOC124901774	Intron	2
CP068271.2:152 533 889	140	SINE (Alu)	NUB1	Intron	2
CP068271.2:155 766 181	330	SINE (Alu)	DPP6	Intron	2
CP068271.2:158 746 775	340	SINE (Alu)	PTPRN2	Intron	2
CP068272.2:5 217 730	320	SINE (Alu)	FARS2	Intron	2
CP068272.2:5 357 830	123	SINE (Alu)	FARS2	Intron	2
CP068272.2:6 146 362	258	SINE (Alu)	F13A1	Intron	2
CP068272.2:7 310 938	81	LTR (ERV1)	LOC102724234	Intron	2
CP068272.2:10 902 109	134	SINE (Alu)	ELOVL2	Intron	2
CP068272.2:13 332 877	318	SINE (Alu)	GFOD1	Intron	2
CP068272.2:13 394 506	330	SINE (Alu)	RPS4XP7	Promoter	2
CP068272.2:17 522 845	331	SINE (Alu)	NUP153	Intron	2
CP068272.2:17 747 146	316	SINE (Alu)	KIF13A	Intron	2
CP068272.2:19 027 502	322	SINE (Alu)	LOC101928519	Intron	2
CP068272.2:28 879 239	101	SINE (Alu)	ZNF311	Intron	2
CP068272.2:29 270 909	139	SINE (Alu)	OR12D2	Intron	2
CP068272.2:29 722 655	318	SINE (Alu)	LOC105375010	Intron	2
CP068272.2:30 680 514	159	LTR (ERV1)	LINC00243	Intron	2
CP068272.2:31 324 347	313	SINE (Alu)	HCG26	Promoter	2
CP068272.2:31 351 695	173	SINE (Alu)	MICB	Intron	2
CP068272.2:32 199 253	321	SINE (Alu)	TSBP1-AS1	Intron	2
CP068272.2:32 343 356	294	SINE (Alu)	LOC124905397	Promoter	2
CP068272.2:32 354 825	315	SINE (Alu)	HLA-DRB3	Intron	2
CP068272.2:32 410 001	319	SINE (Alu)	HLA-DRB1	Intron	1
CP068272.2:32 412 809	307	SINE (Alu)	HLA-DRB1	Intron	2
CP068272.2:32 421 491	285	SINE (Alu)	HLA-DRB1	Intron	1
CP068272.2:32 423 285	1 114	LTR (ERVK)	HLA-DRB1	Promoter	2
CP068272.2:32 487 036	319	SINE (Alu)	HLA-DQB1	Intron	2
CP068272.2:36 183 679	101	LTR (ERV1)	ETV7	Intron	1
CP068272.2:38 355 201	137	LTR (ERVK)	BTBD9	Intron	2
CP068272.2:38 746 508	50	LTR (ERV1)	DNAH8	Intron	2
CP068272.2:42 430 460	160	SINE (Alu)	UBR2	Intron	2
CP068272.2:42 896 868	322	SINE (Alu)	KLC4	Intron	2
CP068272.2:43 181 094	66	LINE (L1)	ZNF318	Intron	2
CP068272.2:43 757 249	314	SINE (Alu)	LINC01512	Intron	2
CP068272.2:43 979 893	978	Retroposon (SVA)	TMEM63B	Intron	2
CP068272.2:45 127 498	324	SINE (Alu)	SUPT3H	Intron	2
CP068272.2:45 835 182	327	SINE (Alu)	CLIC5	Intron	2
CP068272.2:51 717 831	6 018	LINE (L1)	PKHD1	Intron	2
CP068272.2:51 903 534	317	SINE (Alu)	PKHD1	Intron	1
CP068272.2:53 584 806	282	SINE (Alu)	LOC124901334	Intron	2
CP068272.2:53 623 893	313	SINE (Alu)	LOC124901333	Intron	2
CP068272.2:54 692 012	140	SINE (Alu)	FAM83B	Intron	2
CP068272.2:56 735 170	2 593	Retroposon (SVA)	DST	Intron	2
CP068272.2:62 724 632	133	SINE (Alu)	KHDRBS2	Intron	2
CP068272.2:66 430 398	306	SINE (Alu)	EYS	Intron	2
CP068272.2:66 607 855	308	SINE (Alu)	EYS	Intron	2
CP068272.2:66 716 755	327	SINE (Alu)	EYS	Intron	1
CP068272.2:70 011 053	326	SINE (Alu)	ADGRB3	Intron	2
CP068272.2:70 300 658	75	Retroposon (SVA)	ADGRB3	Intron	2
CP068272.2:72 510 962	313	SINE (Alu)	LOC124901339	Intron	2
CP068272.2:73 224 839	301	SINE (Alu)	RIMS1	Intron	2
CP068272.2:75 805 446	325	SINE (Alu)	LOC101928516	Intron	2
CP068272.2:76 483 619	49	SINE (Alu)	FILIP1	Intron	2
CP068272.2:78 884 410	321	SINE (Alu)	MEI4	Intron	2
CP068272.2:79 310 809	290	SINE (Alu)	LOC105377865	Intron	2
CP068272.2:84 185 928	313	SINE (Alu)	UBE3D	Intron	2
CP068272.2:91 454 963	6 067	LINE (L1)	BACH2	Intron	2
CP068272.2:97 577 072	329	LTR (ERV1)	UFL1-AS1	Intron	1
CP068272.2:97 741 692	319	SINE (Alu)	FHL5	Intron	2
CP068272.2:105 950 363	309	SINE (Alu)	HACE1	Intron	2
CP068272.2:109 130 963	270	Retroposon (SVA)	SEC63	Intron	1
CP068272.2:111 652 259	308	SINE (Alu)	SLC22A16	Intron	2
CP068272.2:117 169 354	289	SINE (Alu)	FRK	Intron	2
CP068272.2:117 706 715	316	SINE (Alu)	TRAPPC3L	Intron	2
CP068272.2:119 490 091	295	SINE (Alu)	SLC35F1	Intron	2
CP068272.2:123 847 137	320	SINE (Alu)	PKIB	Intron	2
CP068272.2:131 488 431	283	SINE (Alu)	SAMD3	Intron	2
CP068272.2:132 890 430	328	SINE (Alu)	ENPP3	Intron	2
CP068272.2:134 599 477	177	SINE (Alu)	EYA4	Intron	2
CP068272.2:140 162 116	320	SINE (Alu)	REPS1	Intron	1
CP068272.2:140 470 041	315	SINE (Alu)	LOC102723690	Intron	2
CP068272.2:146 891 518	343	SINE (Alu)	EPM2A	Intron	2
CP068272.2:155 567 177	275	SINE (Alu)	LOC105378067	Promoter	2
CP068272.2:155 567 177	275	SINE (Alu)	LOC105378067	Intron	2
CP068272.2:157 199 315	307	SINE (Alu)	LOC101928923	Intron	2
CP068272.2:158 278 908	327	SINE (Alu)	ARID1B	Intron	2
CP068272.2:159 373 455	1 102	Retroposon (SVA)	SERAC1	Intron	2
CP068272.2:159 484 439	527	Retroposon (SVA)	TULP4	Intron	1
CP068272.2:159 484 457	126	Retroposon (SVA)	TULP4	Intron	1
CP068272.2:159 484 658	400	Retroposon (SVA)	TULP4	Intron	1
CP068272.2:159 484 900	342	Retroposon (SVA)	TULP4	Intron	1
CP068272.2:159 485 235	347	Retroposon (SVA)	TULP4	Intron	2
CP068272.2:163 955 920	360	SINE (Alu)	PRKN	Intron	2
CP068272.2:167 234 415	324	SINE (Alu)	PDE10A	Intron	1
CP068272.2:170 025 258	352	LTR (ERV1)	LOC105378143	Intron	2
CP068273.2:1 857 117	311	SINE (Alu)	LOC124901165	Intron	2
CP068273.2:1 883 626	3 184	LINE (L1)	LOC105374618	Intron	2
CP068273.2:13 792 771	312	SINE (Alu)	DNAH5	Intron	2
CP068273.2:14 625 306	222	SINE (Alu)	OTULIN	Intron	2
CP068273.2:16 655 697	310	SINE (Alu)	MYO10	Intron	2
CP068273.2:20 465 006	163	SINE (Alu)	CDH18	Intron	2
CP068273.2:25 338 978	294	SINE (Alu)	LINC02211	Intron	2
CP068273.2:32 854 713	329	SINE (Alu)	NPR3	Intron	2
CP068273.2:37 665 203	153	Retroposon (SVA)	WDR70	Intron	2
CP068273.2:37 812 856	625	Retroposon (SVA)	WDR70	Intron	2
CP068273.2:37 937 889	282	SINE (Alu)	WDR70	Intron	2
CP068273.2:39 542 380	332	SINE (Alu)	C9	Intron	2
CP068273.2:42 919 106	337	SINE (Alu)	GHR	Intron	2
CP068273.2:43 769 164	68	LTR (ERV1)	LOC124900190	Intron	2
CP068273.2:43 795 329	321	SINE (Alu)	PAIP1	Intron	2
CP068273.2:63 380 904	323	SINE (Alu)	IPO11	Intron	2
CP068273.2:66 799 023	343	Retroposon (SVA)	ERBIN	Intron	2
CP068273.2:69 790 093	650	LINE (L1)	LOC107984116	Intron	2
CP068273.2:70 611 005	329	SINE (Alu)	LOC124906514	Intron	2
CP068273.2:70 867 341	328	SINE (Alu)	GUSBP15	Intron	1
CP068273.2:71 140 624	328	SINE (Alu)	GUSBP15	Intron	1
CP068273.2:76 653 910	176	Retroposon (SVA)	SV2C	Intron	2
CP068273.2:77 524 535	146	Retroposon (SVA)	AGGF1	Intron	1
CP068273.2:78 235 160	335	SINE (Alu)	TBCA	Intron	1
CP068273.2:78 248 785	311	SINE (Alu)	TBCA	Intron	1
CP068273.2:78 760 227	284	SINE (Alu)	AP3B1	Intron	2
CP068273.2:81 228 496	308	SINE (Alu)	MSH3	Intron	2
CP068273.2:83 675 995	306	SINE (Alu)	XRCC4	Intron	2
CP068273.2:88 585 051	329	SINE (Alu)	LOC105379070	Intron	2
CP068273.2:91 188 443	154	SINE (Alu)	ADGRV1	Intron	2
CP068273.2:109 845 795	97	Retroposon (SVA)	PJA2	Intron	2
CP068273.2:111 260 797	171	SINE (Alu)	SLC25A46	Intron	2
CP068273.2:111 960 940	186	SINE (Alu)	CAMK4	Intron	2
CP068273.2:115 269 236	313	SINE (Alu)	LOC101927078	Intron	2
CP068273.2:116 675 590	310	SINE (Alu)	COMMD10	Intron	1
CP068273.2:118 013 084	306	SINE (Alu)	LINC00992	Intron	2
CP068273.2:123 455 525	320	SINE (Alu)	SNX24	Intron	2
CP068273.2:123 753 516	522	LINE (L1)	TUBB8P11	Intron	2
CP068273.2:138 214 048	1 321	Retroposon (SVA)	KLHL3	Intron	2
CP068273.2:138 669 937	65	LTR (ERV1)	BRD8	Intron	2
CP068273.2:139 924 858	293	SINE (Alu)	SPATA24	Intron	2
CP068273.2:143 506 739	304	SINE (Alu)	ARHGAP26	Intron	2
CP068273.2:147 526 118	318	SINE (Alu)	PPP2R2B	Intron	2
CP068273.2:150 072 540	318	SINE (Alu)	CSNK1A1	Intron	2
CP068273.2:155 492 380	2 717	Retroposon (SVA)	MRPL22	Intron	2
CP068273.2:156 439 730	2 491	LINE (L1)	SGCD	Intron	2
CP068273.2:163 927 719	172	LINE (L1)	LOC105377700	Intron	2
CP068273.2:165 474 497	309	SINE (Alu)	LINC03000	Intron	2
CP068273.2:168 395 198	899	Retroposon (SVA)	TENM2	Intron	2
CP068273.2:180 746 045	173	SINE (Alu)	RASGEF1C	Intron	2
CP068274.2:1 306 582	316	SINE (Alu)	MAEA	Intron	2
CP068274.2:1 318 271	132	SINE (Alu)	MAEA	Intron	2
CP068274.2:4 626 805	51	SINE (MIR)	STX18-AS1	Intron	2
CP068274.2:6 949 610	159	Retroposon (SVA)	TBC1D14	Intron	1
CP068274.2:6 949 676	159	Retroposon (SVA)	TBC1D14	Intron	1
CP068274.2:8 373 198	159	SINE (Alu)	ACOX3	Intron	2
CP068274.2:10 607 028	6 059	LINE (L1)	CLNK	Intron	2
CP068274.2:10 696 742	220	SINE (Alu)	CLNK	Intron	2
CP068274.2:14 827 301	5 463	LINE (L1)	LINC00504	Intron	2
CP068274.2:14 937 063	114	LTR (ERVL)	CPEB2-DT	Intron	2
CP068274.2:15 773 375	497	Retroposon (SVA)	CD38	Intron	2
CP068274.2:16 374 994	71	Retroposon (SVA)	LOC105374505	Intron	2
CP068274.2:16 374 994	121	Retroposon (SVA)	LOC105374505	Intron	1
CP068274.2:19 202 987	313	SINE (Alu)	LINC02438	Intron	2
CP068274.2:20 388 569	987	LINE (L1)	SLIT2	Intron	2
CP068274.2:25 221 331	140	LTR (ERV1)	PI4K2B	Intron	2
CP068274.2:25 809 920	145	SINE (Alu)	SEL1L3	Intron	2
CP068274.2:26 470 139	281	SINE (Alu)	CCKAR	Intron	1
CP068274.2:28 304 766	311	SINE (Alu)	LOC105374557	Intron	2
CP068274.2:30 879 423	320	SINE (Alu)	PCDH7	Intron	2
CP068274.2:36 292 568	313	SINE (Alu)	DTHD1	Intron	2
CP068274.2:37 478 028	86	Retroposon (SVA)	C4orf19	Intron	2
CP068274.2:39 675 502	162	SINE (Alu)	UBE2K	Intron	2
CP068274.2:40 853 100	332	SINE (Alu)	APBB2	Intron	2
CP068274.2:41 203 745	338	SINE (Alu)	UCHL1-DT	Intron	2
CP068274.2:41 892 608	309	SINE (Alu)	LOC105374426	Intron	2
CP068274.2:41 995 740	182	SINE (Alu)	SLC30A9	Intron	2
CP068274.2:47 509 431	333	SINE (Alu)	ATP10D	Intron	2
CP068274.2:58 993 922	320	SINE (Alu)	CLOCK	Intron	2
CP068274.2:59 545 991	194	SINE (Alu)	CRACD	Intron	2
CP068274.2:67 788 030	290	SINE (Alu)	TECRL	Intron	2
CP068274.2:72 534 968	322	SINE (Alu)	UGT2B7	Intron	2
CP068274.2:72 690 165	265	LINE (L1)	TUBB8P11	Intron	2
CP068274.2:73 581 960	186	LINE (L1)	CSN3	Promoter	2
CP068274.2:73 581 960	186	LINE (L1)	CSN3	Intron	2
CP068274.2:81 689 174	6 068	LINE (L1)	FRAS1	Intron	2
CP068274.2:82 894 257	83	LTR (ERV1)	LINC00989	Intron	2
CP068274.2:83 183 785	685	LINE (L1)	PCAT4	Intron	2
CP068274.2:83 303 274	6 057	LINE (L1)	ANTXR2	Intron	2
CP068274.2:85 588 188	303	SINE (Alu)	LOC105377308	Intron	2
CP068274.2:85 803 947	316	SINE (Alu)	LOC105377310	Intron	2
CP068274.2:88 878 813	316	SINE (Alu)	ARHGAP24	Intron	2
CP068274.2:88 913 506	72	LINE (L1)	ARHGAP24	Intron	2
CP068274.2:90 440 357	329	SINE (Alu)	AFF1	Intron	2
CP068274.2:92 373 426	216	SINE (Alu)	FAM13A	Intron	1
CP068274.2:93 980 210	61	LTR (ERVL)	CCSER1	Intron	2
CP068274.2:94 335 928	1 735	LINE (L1)	CCSER1	Intron	1
CP068274.2:95 798 087	316	SINE (Alu)	GRID2	Intron	2
CP068274.2:96 959 694	6 047	LINE (L1)	GRID2	Intron	2
CP068274.2:98 264 406	317	SINE (Alu)	BMPR1B	Intron	2
CP068274.2:99 966 117	316	SINE (Alu)	LINC02267	Intron	2
CP068274.2:106 266 328	2 504	LINE (L1)	SLC9B1	Intron	2
CP068274.2:107 986 922	312	SINE (Alu)	CXXC4-AS1	Intron	2
CP068274.2:112 879 734	320	SINE (Alu)	MCUB	Intron	2
CP068274.2:117 763 832	318	SINE (Alu)	LOC105377379	Intron	2
CP068274.2:120 081 692	901	LINE (L1)	LOC107986306	Intron	1
CP068274.2:124 831 135	179	SINE (Alu)	LOC107986310	Intron	2
CP068274.2:126 179 534	277	SINE (Alu)	FGF2	Intron	2
CP068274.2:127 013 551	129	LINE (L1)	LINC01091	Intron	2
CP068274.2:130 985 011	310	SINE (Alu)	INTU	Intron	2
CP068274.2:131 590 178	321	SINE (Alu)	PGRMC2	Intron	2
CP068274.2:143 337 477	149	SINE (Alu)	MAML3	Intron	2
CP068274.2:145 654 380	312	SINE (Alu)	INPP4B	Intron	2
CP068274.2:146 289	3 374	Retroposon (SVA)	ZNF718	Intron	2
CP068274.2:147 791 504	326	SINE (Alu)	LOC105377462	Intron	2
CP068274.2:152 561 796	338	SINE (Alu)	LINC02355	Intron	2
CP068274.2:153 595 372	142	LINE (L1)	LRBA	Intron	2
CP068274.2:153 696 604	324	SINE (Alu)	LRBA	Intron	2
CP068274.2:153 984 112	97	Retroposon (SVA)	LRBA	Intron	2
CP068274.2:154 538 658	126	Retroposon (SVA)	SH3D19	Intron	1
CP068274.2:157 304 320	324	SINE (Alu)	LOC101927947	Intron	2
CP068274.2:158 831 227	103	SINE (Alu)	LOC105377505	Intron	2
CP068274.2:163 055 731	321	SINE (Alu)	LOC107986324	Intron	2
CP068274.2:164 785 720	310	SINE (Alu)	FSTL5	Intron	1
CP068274.2:166 928 648	313	SINE (Alu)	MARCHF1	Intron	2
CP068274.2:167 229 299	309	SINE (Alu)	MARCHF1	Intron	2
CP068274.2:168 130 293	57	SINE (Alu)	SMIM31	Intron	2
CP068274.2:169 429 777	591	LINE (L1)	TLL1	Intron	2
CP068274.2:173 273 624	299	SINE (Alu)	LOC105377530	Intron	1
CP068274.2:176 567 724	317	SINE (Alu)	GALNT7	Intron	2
CP068274.2:177 630 266	311	SINE (Alu)	CEP44	Intron	2
CP068274.2:177 952 805	325	SINE (Alu)	LOC105377549	Promoter	2
CP068274.2:177 952 805	325	SINE (Alu)	LOC105377549	Intron	2
CP068274.2:180 879 949	64	LTR (ERV1)	AGA-DT	Intron	1
CP068274.2:183 743 146	133	SINE (Alu)	LOC105377567	Intron	2
CP068274.2:183 970 626	312	SINE (Alu)	LOC105377567	Intron	2
CP068274.2:184 287 169	205	Retroposon (SVA)	LOC105377567	Intron	2
CP068274.2:188 577 957	311	SINE (Alu)	SNX25	Intron	2
CP068274.2:188 770 999	325	SINE (Alu)	CFAP96	Intron	2
CP068274.2:188 804 270	286	SINE (Alu)	CCDC110	Intron	2
CP068275.2:1 238 682	63	LTR (ERV1)	CNTN6	Intron	2
CP068275.2:2 123 290	336	SINE (Alu)	CNTN4	Intron	2
CP068275.2:2 584 962	313	SINE (Alu)	CNTN4	Intron	2
CP068275.2:5 436 105	317	SINE (Alu)	LOC105376936	Promoter	2
CP068275.2:7 119 409	64	SINE (Alu)	GRM7	Intron	2
CP068275.2:7 563 823	309	SINE (Alu)	GRM7	Intron	2
CP068275.2:11 157 429	314	SINE (Alu)	HRH1	Intron	2
CP068275.2:11 482 565	147	Retroposon (SVA)	ATG7	Intron	2
CP068275.2:12 308 635	309	SINE (Alu)	PPARG	Intron	2
CP068275.2:19 974 106	100	SINE (Alu)	RAB5A	Intron	1
CP068275.2:24 782 411	319	SINE (Alu)	LOC107986070	Intron	1
CP068275.2:25 351 239	317	SINE (Alu)	RARB	Intron	2
CP068275.2:25 630 260	315	SINE (Alu)	TOP2B	Intron	2
CP068275.2:28 128 299	323	SINE (Alu)	LOC105377008	Intron	2
CP068275.2:29 581 534	319	SINE (Alu)	RBMS3	Intron	2
CP068275.2:32 005 643	94	LTR (ERV1)	OSBPL10	Intron	1
CP068275.2:32 394 273	253	SINE (Alu)	CMTM7	Intron	2
CP068275.2:35 011 146	322	SINE (Alu)	LOC101928135	Intron	2
CP068275.2:36 454 965	138	LTR (ERV1)	STAC	Intron	2
CP068275.2:38 085 678	298	Retroposon (SVA)	DLEC1	Intron	2
CP068275.2:38 119 250	134	SINE (Alu)	DLEC1	Intron	2
CP068275.2:45 517 532	316	SINE (Alu)	LARS2	Intron	2
CP068275.2:45 742 852	321	SINE (Alu)	SACM1L	Intron	2
CP068275.2:47 760 449	319	SINE (Alu)	SMARCC1	Intron	2
CP068275.2:48 737 575	325	SINE (Alu)	IP6K2	Intron	2
CP068275.2:49 943 579	323	SINE (Alu)	MON1A	Intron	2
CP068275.2:50 054 727	266	SINE (Alu)	RBM6	Intron	2
CP068275.2:50 341 806	95	Retroposon (SVA)	HYAL1	Intron	1
CP068275.2:50 871 694	344	SINE (Alu)	DOCK3	Intron	2
CP068275.2:51 280 052	76	Retroposon (SVA)	DOCK3	Intron	1
CP068275.2:51 280 097	124	Retroposon (SVA)	DOCK3	Intron	1
CP068275.2:51 618 731	135	SINE (Alu)	RAD54L2	Intron	1
CP068275.2:57 489 364	483	LTR (ERV1)	DNAH12	Intron	1
CP068275.2:57 618 834	308	SINE (Alu)	PDE12	Intron	2
CP068275.2:59 950 161	113	SINE (Alu)	FHIT	Intron	2
CP068275.2:61 714 843	176	Retroposon (SVA)	PTPRG	Intron	2
CP068275.2:63 598 884	311	SINE (Alu)	SYNPR	Intron	2
CP068275.2:66 758 056	136	SINE (Alu)	LOC105377142	Intron	1
CP068275.2:66 961 938	131	LINE (L1)	LOC105377144	Intron	1
CP068275.2:68 464 026	50	LTR (ERV1)	TAFA1	Intron	2
CP068275.2:68 858 645	274	SINE (Alu)	TAFA4	Intron	2
CP068275.2:68 878 080	290	SINE (Alu)	TAFA4	Intron	2
CP068275.2:71 229 921	300	SINE (Alu)	FOXP1	Intron	2
CP068275.2:78 864 624	88	LINE (L1)	ROBO1	Intron	2
CP068275.2:80 595 595	6 098	LINE (L1)	LOC105377177	Intron	2
CP068275.2:82 148 803	6 115	LINE (L1)	LINC02008	Intron	2
CP068275.2:82 376 966	107	LTR (ERV1)	LINC02008	Intron	2
CP068275.2:101 546 113	225	Retroposon (SVA)	DCBLD2	Intron	1
CP068275.2:103 397 456	327	SINE (Alu)	ADGRG7	Intron	1
CP068275.2:104 176 251	320	SINE (Alu)	SENP7	Intron	2
CP068275.2:104 197 720	134	SINE (Alu)	SENP7	Intron	2
CP068275.2:110 894 252	325	SINE (Alu)	IFT57	Intron	2
CP068275.2:114 228 331	327	SINE (Alu)	LOC105374039	Intron	2
CP068275.2:114 926 706	49	LINE (L1)	SLC9C1	Intron	2
CP068275.2:117 366 880	320	SINE (Alu)	ZBTB20	Intron	2
CP068275.2:125 139 153	324	SINE (Alu)	WDR5B-DT	Intron	2
CP068275.2:125 466 962	174	Retroposon (SVA)	HSPBAP1	Intron	1
CP068275.2:127 413 483	317	SINE (Alu)	KALRN	Intron	2
CP068275.2:127 593 655	324	SINE (Alu)	ITGB5	Intron	2
CP068275.2:132 210 422	310	SINE (Alu)	IFT122	Intron	2
CP068275.2:135 215 089	406	Retroposon (SVA)	DNAJC13	Intron	2
CP068275.2:135 215 491	48	Retroposon (SVA)	DNAJC13	Intron	1
CP068275.2:146 290 331	107	SINE (Alu)	SLC9A9	Intron	2
CP068275.2:148 980 021	49	LTR (ERV1)	PLSCR4	Intron	2
CP068275.2:151 234 494	260	LINE (L1)	LOC105374150	Intron	1
CP068275.2:151 234 633	260	LINE (L1)	LOC105374150	Intron	1
CP068275.2:151 318 626	3 976	LTR (ERVK)	LOC105374150	Intron	2
CP068275.2:152 131 587	97	Retroposon (SVA)	TM4SF1-AS1	Intron	2
CP068275.2:152 131 779	252	Retroposon (SVA)	TM4SF1-AS1	Intron	2
CP068275.2:159 296 741	308	SINE (Alu)	KCNAB1	Intron	2
CP068275.2:159 953 140	73	Retroposon (SVA)	LOC101928236	Intron	2
CP068275.2:159 953 717	72	Retroposon (SVA)	LOC101928236	Intron	1
CP068275.2:175 468 147	319	SINE (Alu)	NCEH1	Intron	2
CP068275.2:176 823 768	688	LINE (L1)	NLGN1	Intron	2
CP068275.2:177 480 228	322	SINE (Alu)	NAALADL2	Intron	2
CP068275.2:180 260 568	86	LTR (ERV1)	LINC00578	Intron	1
CP068275.2:181 925 312	67	Retroposon (SVA)	PIK3CA-DT	Intron	2
CP068275.2:182 531 561	147	Retroposon (SVA)	USP13	Intron	2
CP068275.2:182 720 564	329	SINE (Alu)	PEX5L-AS2	Intron	2
CP068275.2:183 568 171	324	SINE (Alu)	LOC101928882	Intron	2
CP068275.2:191 982 178	322	SINE (Alu)	TPRG1	Intron	2
CP068275.2:193 255 336	187	SINE (Alu)	TMEM207	Intron	2
CP068275.2:198 682 493	309	SINE (Alu)	SDHAP1	Intron	2
CP068275.2:198 755 196	328	SINE (Alu)	TFRC	Intron	2
CP068275.2:200 460 370	71	SINE (Alu)	RUBCN	Intron	2
CP068276.2:1 142 774	278	SINE (Alu)	SNTG2	Intron	2
CP068276.2:1 468 423	328	SINE (Alu)	TPO	Intron	2
CP068276.2:2 305 670	1 051	LTR (ERV1)	MYT1L	Intron	1
CP068276.2:3 693 805	313	SINE (Alu)	ALLC	Promoter	2
CP068276.2:3 693 805	313	SINE (Alu)	ALLC	Intron	2
CP068276.2:15 643 219	127	Retroposon (SVA)	DDX1	Intron	1
CP068276.2:19 661 976	317	SINE (Alu)	LOC124905977	Intron	2
CP068276.2:24 290 241	122	SINE (Alu)	ITSN2	Intron	2
CP068276.2:26 286 406	329	SINE (Alu)	HADHB	Intron	2
CP068276.2:28 174 642	324	SINE (Alu)	BABAM2	Intron	2
CP068276.2:29 627 130	318	SINE (Alu)	ALK	Intron	2
CP068276.2:34 078 377	316	SINE (Alu)	LINC01317	Intron	2
CP068276.2:40 395 538	331	SINE (Alu)	SLC8A1	Intron	2
CP068276.2:43 303 089	146	Retroposon (SVA)	THADA	Intron	2
CP068276.2:43 303 395	713	Retroposon (SVA)	THADA	Intron	2
CP068276.2:44 594 092	211	Retroposon (SVA)	CAMKMT	Intron	2
CP068276.2:44 604 010	316	SINE (Alu)	CAMKMT	Intron	2
CP068276.2:48 560 593	3 151	Retroposon (SVA)	STON1-GTF2A1L	Intron	2
CP068276.2:50 018 029	132	SINE (Alu)	NRXN1	Intron	2
CP068276.2:50 985 182	333	SINE (Alu)	NRXN1	Intron	2
CP068276.2:51 238 237	297	SINE (Alu)	NRXN1-DT	Intron	2
CP068276.2:51 890 531	2 225	LINE (L1)	NRXN1-DT	Intron	2
CP068276.2:54 094 149	324	SINE (Alu)	ACYP2	Intron	2
CP068276.2:54 460 543	251	SINE (Alu)	SPTBN1	Promoter	2
CP068276.2:54 460 543	251	SINE (Alu)	SPTBN1	Intron	2
CP068276.2:56 143 345	317	SINE (Alu)	LOC105374690	Intron	2
CP068276.2:62 280 994	312	SINE (Alu)	LOC105374761	Intron	2
CP068276.2:63 730 038	322	Retroposon (SVA)	WDPCP	Intron	1
CP068276.2:65 116 309	305	SINE (Alu)	RAB1A	Intron	2
CP068276.2:69 529 836	322	SINE (Alu)	AAK1	Intron	2
CP068276.2:72 253 512	6 061	LINE (L1)	EXOC6B	Intron	2
CP068276.2:74 292 982	328	SINE (Alu)	SLC4A5	Intron	2
CP068276.2:77 094 493	60	LTR (ERV1)	LRRTM4	Intron	1
CP068276.2:77 094 493	60	LTR (ERV1)	LRRTM4	Intron	1
CP068276.2:81 871 469	6 015	LINE (L1)	LOC105374829	Intron	2
CP068276.2:86 976 073	311	SINE (Alu)	RGPD1	Intron	1
CP068276.2:87 918 971	450	LINE (L1)	RGPD2	Intron	2
CP068276.2:102 198 725	315	SINE (Alu)	MAP4K4	Intron	2
CP068276.2:107 771 785	320	SINE (Alu)	LINC01789	Intron	2
CP068276.2:111 709 562	327	SINE (Alu)	MIR4435-2HG	Intron	2
CP068276.2:115 501 221	316	SINE (Alu)	DPP10	Intron	2
CP068276.2:116 195 329	4 143	LINE (L1)	DPP10	Intron	2
CP068276.2:127 553 905	228	Retroposon (SVA)	LOC105373605	Intron	1
CP068276.2:128 734 017	288	SINE (Alu)	HS6ST1	Intron	2
CP068276.2:131 521 066	317	SINE (Alu)	FAM168B	Intron	2
CP068276.2:133 554 578	318	SINE (Alu)	NCKAP5	Intron	2
CP068276.2:137 933 686	324	SINE (Alu)	THSD7B	Intron	2
CP068276.2:141 222 232	325	SINE (Alu)	LRP1B	Intron	2
CP068276.2:141 752 398	57	LINE (L1)	LRP1B	Intron	2
CP068276.2:142 014 066	316	SINE (Alu)	LRP1B	Intron	1
CP068276.2:148 342 955	300	SINE (Alu)	ACVR2A	Intron	2
CP068276.2:150 220 893	319	SINE (Alu)	MMADHC-DT	Intron	2
CP068276.2:153 756 655	320	SINE (Alu)	GALNT13	Intron	2
CP068276.2:158 030 254	325	SINE (Alu)	ACVR1C	Intron	2
CP068276.2:158 882 881	328	SINE (Alu)	CCDC148	Intron	2
CP068276.2:169 073 025	328	SINE (Alu)	CERS6	Intron	2
CP068276.2:169 505 778	323	SINE (Alu)	ABCB11	Intron	2
CP068276.2:172 938 241	314	SINE (Alu)	ITGA6	Intron	2
CP068276.2:175 359 957	318	SINE (Alu)	CHN1	Intron	2
CP068276.2:177 936 293	334	SINE (Alu)	AGPS	Intron	1
CP068276.2:177 969 024	339	SINE (Alu)	AGPS	Intron	2
CP068276.2:178 294 120	216	LINE (L1)	PDE11A	Intron	2
CP068276.2:181 551 423	321	SINE (Alu)	UBE2E3	Intron	2
CP068276.2:182 940 163	309	SINE (Alu)	PDE1A	Intron	2
CP068276.2:187 840 214	313	SINE (Alu)	CALCRL-AS1	Intron	2
CP068276.2:191 887 362	476	Retroposon (SVA)	MYO1B	Intron	1
CP068276.2:192 410 401	157	LTR (ERV1)	CAVIN2-AS1	Intron	1
CP068276.2:192 619 884	241	LTR (ERV1)	TMEFF2	Intron	1
CP068276.2:196 356 056	275	SINE (Alu)	DNAH7	Intron	2
CP068276.2:198 382 303	310	SINE (Alu)	PLCL1	Intron	2
CP068276.2:198 513 690	136	SINE (Alu)	PLCL1	Intron	2
CP068276.2:201 680 598	334	SINE (Alu)	CASP10	Intron	2
CP068276.2:201 765 377	3 172	Retroposon (SVA)	CASP8	Intron	2
CP068276.2:208 081 694	324	SINE (Alu)	METTL21A	Intron	2
CP068276.2:209 066 826	324	SINE (Alu)	LOC101927960	Intron	2
CP068276.2:212 323 899	315	SINE (Alu)	ERBB4	Intron	2
CP068276.2:212 461 340	258	SINE (Alu)	ERBB4	Intron	2
CP068276.2:214 127 683	242	SINE (Alu)	SPAG16	Intron	2
CP068276.2:214 395 182	306	SINE (Alu)	SPAG16	Intron	2
CP068276.2:215 319 682	77	Retroposon (SVA)	SNHG31	Intron	2
CP068276.2:215 369 785	171	SINE (Alu)	SNHG31	Intron	2
CP068276.2:216 174 633	132	SINE (Alu)	LOC102724861	Intron	1
CP068276.2:217 798 533	316	SINE (Alu)	DIRC3-AS1	Intron	1
CP068276.2:218 962 523	296	SINE (Alu)	USP37	Intron	2
CP068276.2:220 421 760	313	SINE (Alu)	LOC105373890	Intron	1
CP068276.2:220 966 361	322	SINE (Alu)	LOC105373893	Intron	2
CP068276.2:223 381 036	2 476	Retroposon (SVA)	ACSL3	Intron	2
CP068276.2:223 415 723	315	SINE (Alu)	ACSL3	Intron	2
CP068276.2:226 370 859	317	SINE (Alu)	LOC105373914	Intron	1
CP068276.2:227 641 518	328	SINE (Alu)	COL4A4	Intron	2
CP068276.2:233 687 447	149	SINE (Alu)	INPP5D	Intron	1
CP068276.2:234 212 789	50	Retroposon (SVA)	UGT1A8	Intron	2
CP068276.2:240 512 571	311	SINE (Alu)	NDUFA10	Intron	2
CP068277.2:7 919 418	309	SINE (Alu)	RERE	Intron	2
CP068277.2:7 974 800	316	SINE (Alu)	RERE	Intron	2
CP068277.2:17 172 541	320	SINE (Alu)	PADI4	Intron	2
CP068277.2:20 992 774	316	SINE (Alu)	EIF4G3	Intron	2
CP068277.2:28 237 649	314	SINE (Alu)	PHACTR4	Intron	2
CP068277.2:28 260 987	318	SINE (Alu)	PHACTR4	Intron	2
CP068277.2:28 413 736	333	SINE (Alu)	TRNAU1AP	Intron	1
CP068277.2:28 942 968	324	SINE (Alu)	EPB41	Intron	2
CP068277.2:38 352 287	74	SINE (Alu)	LOC105378657	Intron	2
CP068277.2:42 148 108	314	SINE (Alu)	FOXJ3	Intron	2
CP068277.2:43 262 333	324	SINE (Alu)	SZT2	Intron	2
CP068277.2:45 201 578	325	SINE (Alu)	MUTYH	Intron	2
CP068277.2:46 090 578	333	SINE (Alu)	LURAP1	Intron	2
CP068277.2:51 393 792	324	SINE (Alu)	EPS15	Intron	2
CP068277.2:56 248 449	3 850	LINE (L1)	LOC124905710	Intron	2
CP068277.2:56 301 172	315	SINE (Alu)	LOC124905710	Intron	2
CP068277.2:59 284 566	318	SINE (Alu)	FGGY	Intron	2
CP068277.2:64 759 239	331	SINE (Alu)	JAK1	Intron	2
CP068277.2:69 438 644	311	SINE (Alu)	LOC105378789	Intron	2
CP068277.2:69 472 604	318	SINE (Alu)	LRRC7	Intron	2
CP068277.2:74 568 854	3 706	LINE (L1)	CRYZ	Intron	2
CP068277.2:81 683 953	323	SINE (Alu)	ADGRL2	Intron	2
CP068277.2:85 780 971	323	SINE (Alu)	COL24A1	Intron	2
CP068277.2:88 493 473	313	SINE (Alu)	PKN2-AS1	Intron	2
CP068277.2:89 748 218	268	SINE (Alu)	LRRC8D	Intron	2
CP068277.2:97 099 968	326	SINE (Alu)	DPYD-AS1	Intron	2
CP068277.2:99 773 243	143	SINE (Alu)	LOC124904230	Intron	1
CP068277.2:99 773 253	143	SINE (Alu)	LOC124904230	Intron	1
CP068277.2:101 153 840	316	SINE (Alu)	LOC102723784	Intron	2
CP068277.2:107 637 360	308	SINE (Alu)	VAV3	Intron	2
CP068277.2:109 210 162	78	Retroposon (SVA)	ELAPOR1	Intron	2
CP068277.2:109 725 939	288	SINE (Alu)	GSTM5	Intron	1
CP068277.2:111 310 370	61	LINE (L1)	CHIA	Intron	2
CP068277.2:111 595 921	319	SINE (Alu)	RAP1A	Intron	2
CP068277.2:114 512 654	311	SINE (Alu)	TRIM33	Intron	2
CP068277.2:114 670 214	303	SINE (Alu)	DENND2C	Intron	2
CP068277.2:117 439 865	79	Retroposon (SVA)	MAN1A2	Intron	2
CP068277.2:120 472 299	321	SINE (Alu)	NBPF8	Intron	2
CP068277.2:147 616 749	173	LINE (L1)	FMO5	Intron	2
CP068277.2:147 621 768	315	SINE (Alu)	FMO5	Intron	2
CP068277.2:149 352 606	291	SINE (Alu)	ANP32E	Intron	2
CP068277.2:149 536 325	328	SINE (Alu)	RPRD2	Intron	2
CP068277.2:152 298 029	256	LINE (L1)	SPRR2G	Intron	2
CP068277.2:155 092 710	319	SINE (Alu)	ARHGEF2	Intron	2
CP068277.2:160 560 541	375	Retroposon (SVA)	TRE-TTC4-2	Promoter	1
CP068277.2:161 213 049	329	SINE (Alu)	ATF6	Intron	2
CP068277.2:165 036 498	272	SINE (Alu)	ALDH9A1	Intron	2
CP068277.2:167 240 949	286	SINE (Alu)	DCAF6	Intron	2
CP068277.2:168 612 295	126	LINE (L1)	NME7	Intron	1
CP068277.2:173 333 814	324	SINE (Alu)	RC3H1	Intron	2
CP068277.2:181 662 904	47	Retroposon (SVA)	LINC01344	Intron	1
CP068277.2:184 970 319	316	SINE (Alu)	LOC107985239	Intron	2
CP068277.2:188 371 799	328	SINE (Alu)	LINC01035	Intron	1
CP068277.2:203 640 459	325	SINE (Alu)	PLEKHA6	Intron	1
CP068277.2:209 973 608	334	SINE (Alu)	LOC105372901	Intron	2
CP068277.2:209 987 115	121	SINE (Alu)	LOC105372901	Intron	2
CP068277.2:210 357 652	118	Retroposon (SVA)	KCNH1	Intron	2
CP068277.2:211 543 946	1 484	Retroposon (SVA)	PPP2R5A	Intron	1
CP068277.2:211 713 734	83	SINE (Alu)	LINC02771	Intron	2
CP068277.2:211 837 439	316	SINE (Alu)	ATF3	Intron	2
CP068277.2:214 261 398	53	LTR (ERVL)	KCNK2	Intron	2
CP068277.2:216 822 048	302	SINE (Alu)	GPATCH2	Intron	2
CP068277.2:216 981 237	328	SINE (Alu)	SPATA17	Intron	2
CP068277.2:216 985 245	311	SINE (Alu)	SPATA17	Intron	2
CP068277.2:217 249 968	6 098	LINE (L1)	LOC105372922	Intron	2
CP068277.2:218 986 191	316	SINE (Alu)	LOC105372926	Intron	2
CP068277.2:220 020 709	317	SINE (Alu)	MTARC2	Intron	2
CP068277.2:221 722 308	173	Retroposon (SVA)	LOC124905750	Intron	1
CP068277.2:221 722 389	175	Retroposon (SVA)	LOC124905750	Intron	1
CP068277.2:221 931 096	331	SINE (Alu)	AIDA	Intron	2
CP068277.2:222 913 578	328	SINE (Alu)	CAPN2	Intron	2
CP068277.2:223 310 757	85	SINE (Alu)	FBXO28	Intron	2
CP068277.2:226 463 590	323	SINE (Alu)	CDC42BPA	Intron	2
CP068277.2:226 503 108	142	SINE (Alu)	CDC42BPA	Intron	2
CP068277.2:230 329 881	304	SINE (Alu)	TTC13	Intron	2
CP068277.2:234 701 085	85	Retroposon (SVA)	ARID4B	Intron	2
CP068277.2:235 287 889	334	SINE (Alu)	LOC105373215	Promoter	2
CP068277.2:235 831 713	323	SINE (Alu)	EDARADD	Intron	2
CP068277.2:236 817 294	313	SINE (Alu)	RYR2	Intron	2
CP068277.2:237 215 622	307	SINE (Alu)	RYR2	Intron	2
CP068277.2:239 055 414	281	LINE (L1)	CHRM3	Intron	2
CP068277.2:240 478 980	330	SINE (Alu)	RGS7	Intron	2
CP068277.2:242 577 599	317	SINE (Alu)	CEP170	Intron	2
CP068277.2:245 785 375	137	Retroposon (SVA)	SMYD3	Intron	2
CP068277.2:246 075 796	265	SINE (Alu)	CNST	Intron	2

2.2 Class II Elements

2.2.1 Distribution

1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 5 rows.

Position	Length	Type	Gene	Annotation	Occurrences
CP068258.2:55 000 772	56	DNA (hAT)	TSHZ2	Intron	2
CP068268.2:29 625 326	54	DNA (TcMar)	SVIL	Intron	2
CP068275.2:10 649 719	82	DNA (hAT)	ATP2B2	Intron	1
CP068277.2:168 313 067	106	DNA (hAT)	LINC00970	Intron	2
CP068277.2:239 923 757	176	DNA (hAT)	GREM2	Intron	2

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

• 1 462 TE deletions have been found, adding up to 2 787 occurrences among cases.
• These deletions have a mean prevalence per sample of 1.9 ± 0.29 (median of 2).
• The deletion length is in the range of 305-331 bp for 50% of them (Q2-Q3, both included), and the maximum length found was 8 502, for a deleted ERVK sequence.

3.1 Allele frequency

• The mean AF for deletions is 0.79 ± 0.25 (median of 0.75).
• With 729 (729 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 26 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is Pyrin domain binding (3.016674e-11), and the highest (among the lowest 10) is cytoskeletal motor activity (0.00730683). The ratio is 242214778.11, i.e., they differ in 8 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0032090	Pyrin domain binding	10/746	11/20758	3.608e-14	3.017e-11	2.742e-11	10	0.0134
GO:0032395	MHC class II receptor activity	16/746	67/20758	1.34e-09	5.602e-07	5.092e-07	16	0.02145
GO:0042609	CD4 receptor binding	7/746	13/20758	1.069e-07	2.98e-05	2.709e-05	7	0.009383
GO:0023026	MHC class II protein complex binding	17/746	109/20758	3.443e-07	7.195e-05	6.541e-05	17	0.02279
GO:0023023	MHC protein complex binding	17/746	126/20758	2.758e-06	0.0004518	0.0004107	17	0.02279
GO:0046703	natural killer cell lectin-like receptor binding	8/746	27/20758	3.242e-06	0.0004518	0.0004107	8	0.01072
GO:0015020	glucuronosyltransferase activity	8/746	36/20758	3.319e-05	0.003963	0.003603	8	0.01072
GO:0042605	peptide antigen binding	16/746	139/20758	4.074e-05	0.004257	0.00387	16	0.02145
GO:0005516	calmodulin binding	20/746	210/20758	7.441e-05	0.006912	0.006284	20	0.02681
GO:0003774	cytoskeletal motor activity	14/746	118/20758	8.74e-05	0.007307	0.006643	14	0.01877
GO:0015085	calcium ion transmembrane transporter activity	15/746	142/20758	0.000186	0.01414	0.01285	15	0.02011
GO:0005216	ion channel activity	33/746	480/20758	0.0003069	0.02105	0.01913	33	0.04424
GO:0051959	dynein light intermediate chain binding	6/746	27/20758	0.0003273	0.02105	0.01913	6	0.008043
GO:0008569	minus-end-directed microtubule motor activity	5/746	19/20758	0.0004519	0.02698	0.02453	5	0.006702
GO:0008194	UDP-glycosyltransferase activity	15/746	157/20758	0.0005516	0.03074	0.02795	15	0.02011
GO:0005262	calcium channel activity	13/746	126/20758	0.0006141	0.03209	0.02917	13	0.01743
GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	5/746	21/20758	0.000745	0.0346	0.03146	5	0.006702
GO:0019198	transmembrane receptor protein phosphatase activity	5/746	21/20758	0.000745	0.0346	0.03146	5	0.006702
GO:0030165	PDZ domain binding	10/746	89/20758	0.00133	0.05596	0.05087	10	0.0134
GO:0140303	intramembrane lipid transporter activity	7/746	47/20758	0.001353	0.05596	0.05087	7	0.009383
GO:0042608	T cell receptor binding	6/746	35/20758	0.001406	0.05596	0.05087	6	0.008043
GO:0005096	GTPase activator activity	22/746	304/20758	0.001552	0.05899	0.05363	22	0.02949
GO:0004029	aldehyde dehydrogenase (NAD+) activity	4/746	15/20758	0.001645	0.05945	0.05405	4	0.005362
GO:0042277	peptide binding	30/746	468/20758	0.001707	0.05945	0.05405	30	0.04021
GO:0008559	ABC-type xenobiotic transporter activity	4/746	16/20758	0.002132	0.06758	0.06143	4	0.005362
GO:0022836	gated channel activity	25/746	372/20758	0.002146	0.06758	0.06143	25	0.03351
GO:0030247	polysaccharide binding	6/746	38/20758	0.002182	0.06758	0.06143	6	0.008043
GO:0004030	aldehyde dehydrogenase [NAD(P)+] activity	4/746	17/20758	0.002709	0.07549	0.06863	4	0.005362
GO:0015385	sodium:proton antiporter activity	4/746	17/20758	0.002709	0.07549	0.06863	4	0.005362
GO:0140327	flippase activity	4/746	17/20758	0.002709	0.07549	0.06863	4	0.005362
GO:0045499	chemorepellent activity	5/746	29/20758	0.003429	0.09247	0.08407	5	0.006702
GO:0016758	hexosyltransferase activity	16/746	210/20758	0.003922	0.1025	0.09315	16	0.02145
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	4/746	19/20758	0.004167	0.1038	0.0944	4	0.005362
GO:0003777	microtubule motor activity	8/746	72/20758	0.004223	0.1038	0.0944	8	0.01072
GO:0004791	thioredoxin-disulfide reductase activity	3/746	10/20758	0.004591	0.1097	0.09968	3	0.004021
GO:0042578	phosphoric ester hydrolase activity	25/746	396/20758	0.004829	0.1121	0.1019	25	0.03351
GO:0052745	inositol phosphate phosphatase activity	4/746	20/20758	0.005063	0.1144	0.104	4	0.005362
GO:0046873	metal ion transmembrane transporter activity	28/746	466/20758	0.005816	0.128	0.1163	28	0.03753
GO:0005154	epidermal growth factor receptor binding	5/746	33/20758	0.00609	0.1306	0.1187	5	0.006702
GO:0003779	actin binding	28/746	471/20758	0.006692	0.1342	0.122	28	0.03753
GO:0140828	metal cation:monoatomic cation antiporter activity	5/746	34/20758	0.006933	0.1342	0.122	5	0.006702
GO:0022839	ion gated channel activity	6/746	48/20758	0.007169	0.1342	0.122	6	0.008043
GO:0005229	intracellular calcium activated chloride channel activity	4/746	22/20758	0.007221	0.1342	0.122	4	0.005362
GO:0051139	metal cation:proton antiporter activity	4/746	22/20758	0.007221	0.1342	0.122	4	0.005362
GO:0061778	intracellular chloride channel activity	4/746	22/20758	0.007221	0.1342	0.122	4	0.005362
GO:0005085	guanyl-nucleotide exchange factor activity	17/746	245/20758	0.007592	0.138	0.1254	17	0.02279
GO:0019211	phosphatase activator activity	4/746	23/20758	0.008497	0.1511	0.1374	4	0.005362
GO:0046030	inositol trisphosphate phosphatase activity	3/746	13/20758	0.0101	0.169	0.1536	3	0.004021
GO:0047134	protein-disulfide reductase (NAD(P)) activity	3/746	13/20758	0.0101	0.169	0.1536	3	0.004021
GO:0005548	phospholipid transporter activity	7/746	67/20758	0.01011	0.169	0.1536	7	0.009383
GO:0005261	cation channel activity	22/746	360/20758	0.01124	0.1835	0.1668	22	0.02949
GO:0017124	SH3 domain binding	11/746	139/20758	0.01173	0.1835	0.1668	11	0.01475
GO:0005200	structural constituent of cytoskeleton	10/746	121/20758	0.01196	0.1835	0.1668	10	0.0134
GO:0000146	microfilament motor activity	5/746	39/20758	0.01239	0.1835	0.1668	5	0.006702
GO:0052866	phosphatidylinositol phosphate phosphatase activity	5/746	39/20758	0.01239	0.1835	0.1668	5	0.006702
GO:0070679	inositol 1,4,5 trisphosphate binding	3/746	14/20758	0.01251	0.1835	0.1668	3	0.004021
GO:0140333	glycerophospholipid flippase activity	3/746	14/20758	0.01251	0.1835	0.1668	3	0.004021
GO:0008381	mechanosensitive ion channel activity	4/746	26/20758	0.01318	0.19	0.1727	4	0.005362
GO:0048487	beta-tubulin binding	5/746	41/20758	0.01521	0.2087	0.1897	5	0.006702
GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3/746	15/20758	0.01523	0.2087	0.1897	3	0.004021
GO:0047555	3',5'-cyclic-GMP phosphodiesterase activity	3/746	15/20758	0.01523	0.2087	0.1897	3	0.004021
GO:0030374	nuclear receptor coactivator activity	6/746	57/20758	0.01618	0.2182	0.1984	6	0.008043
GO:0005080	protein kinase C binding	6/746	58/20758	0.01752	0.2311	0.2101	6	0.008043
GO:0015386	potassium:proton antiporter activity	3/746	16/20758	0.01825	0.2311	0.2101	3	0.004021
GO:0106019	phosphatidylinositol-4,5-bisphosphate phosphatase activity	3/746	16/20758	0.01825	0.2311	0.2101	3	0.004021
GO:0140328	floppase activity	3/746	16/20758	0.01825	0.2311	0.2101	3	0.004021
GO:0034593	phosphatidylinositol bisphosphate phosphatase activity	4/746	29/20758	0.01924	0.2366	0.2151	4	0.005362
GO:0140326	ATPase-coupled intramembrane lipid transporter activity	4/746	29/20758	0.01924	0.2366	0.2151	4	0.005362
GO:0042562	hormone binding	8/746	94/20758	0.01986	0.2376	0.216	8	0.01072
GO:0044325	transmembrane transporter binding	10/746	131/20758	0.0199	0.2376	0.216	10	0.0134
GO:0015298	solute:cation antiporter activity	5/746	45/20758	0.02207	0.2599	0.2363	5	0.006702
GO:0015297	antiporter activity	8/746	97/20758	0.02351	0.2723	0.2475	8	0.01072
GO:0016791	phosphatase activity	18/746	300/20758	0.02407	0.2723	0.2475	18	0.02413
GO:0005217	intracellular ligand-gated ion channel activity	4/746	31/20758	0.0241	0.2723	0.2475	4	0.005362
GO:0015278	calcium-release channel activity	3/746	18/20758	0.02522	0.273	0.2481	3	0.004021
GO:0017128	phospholipid scramblase activity	3/746	18/20758	0.02522	0.273	0.2481	3	0.004021
GO:0030275	LRR domain binding	3/746	18/20758	0.02522	0.273	0.2481	3	0.004021
GO:0005319	lipid transporter activity	12/746	176/20758	0.02547	0.273	0.2481	12	0.01609
GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	5/746	47/20758	0.02615	0.2767	0.2515	5	0.006702
GO:0015144	carbohydrate transmembrane transporter activity	5/746	48/20758	0.02835	0.2848	0.2589	5	0.006702
GO:0042169	SH2 domain binding	5/746	48/20758	0.02835	0.2848	0.2589	5	0.006702
GO:0004115	3',5'-cyclic-AMP phosphodiesterase activity	3/746	19/20758	0.02916	0.2848	0.2589	3	0.004021
GO:0030246	carbohydrate binding	18/746	307/20758	0.02937	0.2848	0.2589	18	0.02413
GO:0005451	monovalent cation:proton antiporter activity	4/746	33/20758	0.02964	0.2848	0.2589	4	0.005362
GO:0015299	solute:proton antiporter activity	4/746	33/20758	0.02964	0.2848	0.2589	4	0.005362
GO:0030296	protein tyrosine kinase activator activity	4/746	33/20758	0.02964	0.2848	0.2589	4	0.005362
GO:0042910	xenobiotic transmembrane transporter activity	4/746	33/20758	0.02964	0.2848	0.2589	4	0.005362
GO:0016798	hydrolase activity, acting on glycosyl bonds	10/746	142/20758	0.03246	0.307	0.2791	10	0.0134
GO:0001972	retinoic acid binding	3/746	20/20758	0.03342	0.307	0.2791	3	0.004021
GO:0004653	polypeptide N-acetylgalactosaminyltransferase activity	3/746	20/20758	0.03342	0.307	0.2791	3	0.004021
GO:0016408	C-acyltransferase activity	3/746	20/20758	0.03342	0.307	0.2791	3	0.004021
GO:0045296	cadherin binding	20/746	357/20758	0.03416	0.3104	0.2822	20	0.02681
GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	3/746	21/20758	0.03797	0.3339	0.3035	3	0.004021
GO:0019200	carbohydrate kinase activity	3/746	21/20758	0.03797	0.3339	0.3035	3	0.004021
GO:0022821	solute:potassium antiporter activity	3/746	21/20758	0.03797	0.3339	0.3035	3	0.004021
GO:0050661	NADP binding	5/746	52/20758	0.03834	0.3339	0.3035	5	0.006702
GO:0000993	RNA polymerase II complex binding	4/746	36/20758	0.03924	0.3382	0.3075	4	0.005362
GO:0140359	ABC-type transporter activity	6/746	70/20758	0.03973	0.3389	0.3081	6	0.008043
GO:0008376	acetylgalactosaminyltransferase activity	4/746	37/20758	0.04279	0.3545	0.3223	4	0.005362
GO:0045505	dynein intermediate chain binding	4/746	37/20758	0.04279	0.3545	0.3223	4	0.005362

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is regulation of T cell mediated immune response to tumor cell (6.891309e-08), and the highest (among the lowest 10) is positive regulation of response to tumor cell (9.16655e-06). The ratio is 133.0161, i.e., they differ in 2 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0002840	regulation of T cell mediated immune response to tumor cell	10/729	16/21069	1.535e-11	6.891e-08	6.334e-08	10	0.01372
GO:0002842	positive regulation of T cell mediated immune response to tumor cell	9/729	13/21069	4.276e-11	9.595e-08	8.819e-08	9	0.01235
GO:0050689	negative regulation of defense response to virus by host	8/729	10/21069	8.373e-11	1.253e-07	1.151e-07	8	0.01097
GO:0002469	myeloid dendritic cell antigen processing and presentation	9/729	17/21069	1.283e-09	1.44e-06	1.323e-06	9	0.01235
GO:0002424	T cell mediated immune response to tumor cell	10/729	24/21069	2.924e-09	2.624e-06	2.412e-06	10	0.01372
GO:0002837	regulation of immune response to tumor cell	10/729	27/21069	1.145e-08	7.338e-06	6.745e-06	10	0.01372
GO:0045655	regulation of monocyte differentiation	10/729	27/21069	1.145e-08	7.338e-06	6.745e-06	10	0.01372
GO:0030224	monocyte differentiation	12/729	43/21069	1.541e-08	8.604e-06	7.908e-06	12	0.01646
GO:0002834	regulation of response to tumor cell	10/729	28/21069	1.725e-08	8.604e-06	7.908e-06	10	0.01372
GO:0002836	positive regulation of response to tumor cell	9/729	22/21069	2.247e-08	9.167e-06	8.426e-06	9	0.01235
GO:0002839	positive regulation of immune response to tumor cell	9/729	22/21069	2.247e-08	9.167e-06	8.426e-06	9	0.01235
GO:0002429	immune response-activating cell surface receptor signaling pathway	36/729	390/21069	9.979e-08	3.188e-05	2.93e-05	36	0.04938
GO:0002757	immune response-activating signal transduction	36/729	390/21069	9.979e-08	3.188e-05	2.93e-05	36	0.04938
GO:0046598	positive regulation of viral entry into host cell	8/729	19/21069	1.066e-07	3.188e-05	2.93e-05	8	0.01097
GO:0075294	positive regulation by symbiont of entry into host	8/729	19/21069	1.066e-07	3.188e-05	2.93e-05	8	0.01097
GO:0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	20/729	147/21069	1.778e-07	4.928e-05	4.529e-05	20	0.02743
GO:0050687	negative regulation of defense response to virus	10/729	35/21069	1.938e-07	4.928e-05	4.529e-05	10	0.01372
GO:0002399	MHC class II protein complex assembly	16/729	97/21069	2.086e-07	4.928e-05	4.529e-05	16	0.02195
GO:0002503	peptide antigen assembly with MHC class II protein complex	16/729	97/21069	2.086e-07	4.928e-05	4.529e-05	16	0.02195
GO:0045657	positive regulation of monocyte differentiation	7/729	15/21069	2.913e-07	6.537e-05	6.009e-05	7	0.009602
GO:0010803	regulation of tumor necrosis factor-mediated signaling pathway	14/729	78/21069	4.1e-07	8.761e-05	8.053e-05	14	0.0192
GO:0002468	dendritic cell antigen processing and presentation	9/729	30/21069	5.039e-07	9.874e-05	9.076e-05	9	0.01235
GO:0002495	antigen processing and presentation of peptide antigen via MHC class II	17/729	116/21069	5.06e-07	9.874e-05	9.076e-05	17	0.02332
GO:0002396	MHC protein complex assembly	16/729	105/21069	6.368e-07	0.0001114	0.0001024	16	0.02195
GO:0002501	peptide antigen assembly with MHC protein complex	16/729	105/21069	6.368e-07	0.0001114	0.0001024	16	0.02195
GO:0002504	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II	17/729	118/21069	6.485e-07	0.0001114	0.0001024	17	0.02332
GO:0002347	response to tumor cell	12/729	59/21069	6.768e-07	0.0001114	0.0001024	12	0.01646
GO:0050852	T cell receptor signaling pathway	22/729	189/21069	6.949e-07	0.0001114	0.0001024	22	0.03018
GO:0052695	cellular glucuronidation	8/729	24/21069	8.891e-07	0.0001376	0.0001265	8	0.01097
GO:0010804	negative regulation of tumor necrosis factor-mediated signaling pathway	10/729	41/21069	9.806e-07	0.0001467	0.0001348	10	0.01372
GO:2001056	positive regulation of cysteine-type endopeptidase activity	20/729	166/21069	1.284e-06	0.0001859	0.0001709	20	0.02743
GO:0019886	antigen processing and presentation of exogenous peptide antigen via MHC class II	16/729	111/21069	1.368e-06	0.0001919	0.0001764	16	0.02195
GO:0002418	immune response to tumor cell	10/729	43/21069	1.575e-06	0.0002143	0.0001969	10	0.01372
GO:0019835	cytolysis	9/729	37/21069	3.526e-06	0.0004654	0.0004278	9	0.01235
GO:0002491	antigen processing and presentation of endogenous peptide antigen via MHC class II	6/729	14/21069	3.98e-06	0.0005103	0.0004691	6	0.00823
GO:0006063	uronic acid metabolic process	8/729	29/21069	4.45e-06	0.0005256	0.0004831	8	0.01097
GO:0019585	glucuronate metabolic process	8/729	29/21069	4.45e-06	0.0005256	0.0004831	8	0.01097
GO:1903902	positive regulation of viral life cycle	8/729	29/21069	4.45e-06	0.0005256	0.0004831	8	0.01097
GO:0002253	activation of immune response	38/729	500/21069	5.436e-06	0.0006256	0.000575	38	0.05213
GO:0002768	immune response-regulating cell surface receptor signaling pathway	36/729	470/21069	8.063e-06	0.0009047	0.0008315	36	0.04938
GO:0021756	striatum development	7/729	24/21069	1.193e-05	0.001306	0.0012	7	0.009602
GO:0050851	antigen receptor-mediated signaling pathway	26/729	297/21069	1.519e-05	0.001623	0.001492	26	0.03567
GO:0043281	regulation of cysteine-type endopeptidase activity involved in apoptotic process	22/729	231/21069	1.869e-05	0.001913	0.001758	22	0.03018
GO:0042093	T-helper cell differentiation	12/729	80/21069	1.875e-05	0.001913	0.001758	12	0.01646
GO:0002294	CD4-positive, alpha-beta T cell differentiation involved in immune response	12/729	82/21069	2.421e-05	0.002415	0.002219	12	0.01646
GO:0048524	positive regulation of viral process	11/729	70/21069	2.658e-05	0.002564	0.002357	11	0.01509
GO:0002287	alpha-beta T cell activation involved in immune response	12/729	83/21069	2.742e-05	0.002564	0.002357	12	0.01646
GO:0002293	alpha-beta T cell differentiation involved in immune response	12/729	83/21069	2.742e-05	0.002564	0.002357	12	0.01646
GO:0032829	regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation	6/729	19/21069	3.1e-05	0.002758	0.002535	6	0.00823
GO:0032831	positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation	6/729	19/21069	3.1e-05	0.002758	0.002535	6	0.00823
GO:0010950	positive regulation of endopeptidase activity	20/729	205/21069	3.134e-05	0.002758	0.002535	20	0.02743
GO:0002381	immunoglobulin production involved in immunoglobulin-mediated immune response	17/729	157/21069	3.246e-05	0.002802	0.002575	17	0.02332
GO:0043382	positive regulation of memory T cell differentiation	6/729	21/21069	5.843e-05	0.004867	0.004474	6	0.00823
GO:0021544	subpallium development	7/729	30/21069	5.856e-05	0.004867	0.004474	7	0.009602
GO:0019884	antigen processing and presentation of exogenous antigen	17/729	165/21069	6.118e-05	0.004992	0.004588	17	0.02332
GO:0001960	negative regulation of cytokine-mediated signaling pathway	13/729	105/21069	6.832e-05	0.005373	0.004939	13	0.01783
GO:0046629	gamma-delta T cell activation	8/729	41/21069	6.863e-05	0.005373	0.004939	8	0.01097
GO:0002292	T cell differentiation involved in immune response	12/729	91/21069	6.944e-05	0.005373	0.004939	12	0.01646
GO:0002361	CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation	6/729	22/21069	7.8e-05	0.005934	0.005454	6	0.00823
GO:0051262	protein tetramerization	13/729	108/21069	9.166e-05	0.006856	0.006302	13	0.01783
GO:0044088	regulation of vacuole organization	10/729	67/21069	9.644e-05	0.007064	0.006493	10	0.01372
GO:0002478	antigen processing and presentation of exogenous peptide antigen	16/729	155/21069	9.759e-05	0.007064	0.006493	16	0.02195
GO:0060761	negative regulation of response to cytokine stimulus	13/729	110/21069	0.0001108	0.007893	0.007255	13	0.01783
GO:0010952	positive regulation of peptidase activity	20/729	226/21069	0.0001228	0.00861	0.007914	20	0.02743
GO:0043380	regulation of memory T cell differentiation	6/729	24/21069	0.0001326	0.009121	0.008383	6	0.00823
GO:0007018	microtubule-based movement	31/729	436/21069	0.0001341	0.009121	0.008383	31	0.04252
GO:0043379	memory T cell differentiation	6/729	25/21069	0.0001694	0.01135	0.01043	6	0.00823
GO:0043367	CD4-positive, alpha-beta T cell differentiation	12/729	100/21069	0.0001742	0.0115	0.01057	12	0.01646
GO:2000516	positive regulation of CD4-positive, alpha-beta T cell activation	9/729	59/21069	0.0001806	0.01175	0.0108	9	0.01235
GO:0006892	post-Golgi vesicle-mediated transport	13/729	116/21069	0.0001903	0.01208	0.0111	13	0.01783
GO:2000116	regulation of cysteine-type endopeptidase activity	22/729	270/21069	0.0001911	0.01208	0.0111	22	0.03018
GO:0009595	detection of biotic stimulus	9/729	60/21069	0.000206	0.01284	0.0118	9	0.01235
GO:0035710	CD4-positive, alpha-beta T cell activation	15/729	149/21069	0.0002107	0.01296	0.01191	15	0.02058
GO:0090715	immunological memory formation process	6/729	26/21069	0.0002139	0.01297	0.01192	6	0.00823
GO:0098581	detection of external biotic stimulus	8/729	48/21069	0.000219	0.0131	0.01205	8	0.01097
GO:2000785	regulation of autophagosome assembly	9/729	61/21069	0.0002343	0.01384	0.01272	9	0.01235
GO:0098742	cell-cell adhesion via plasma-membrane adhesion molecules	23/729	293/21069	0.0002379	0.01387	0.01275	23	0.03155
GO:0032088	negative regulation of NF-kappaB transcription factor activity	13/729	121/21069	0.0002898	0.01668	0.01533	13	0.01783
GO:0098543	detection of other organism	7/729	39/21069	0.0003376	0.01914	0.0176	7	0.009602
GO:0030900	forebrain development	29/729	419/21069	0.0003413	0.01914	0.0176	29	0.03978
GO:0022409	positive regulation of cell-cell adhesion	32/729	481/21069	0.000347	0.01922	0.01767	32	0.0439
GO:0033209	tumor necrosis factor-mediated signaling pathway	14/729	141/21069	0.0003905	0.02137	0.01965	14	0.0192
GO:0021537	telencephalon development	22/729	286/21069	0.0004257	0.0225	0.02068	22	0.03018
GO:0007269	neurotransmitter secretion	15/729	159/21069	0.0004262	0.0225	0.02068	15	0.02058
GO:0099643	signal release from synapse	15/729	159/21069	0.0004262	0.0225	0.02068	15	0.02058
GO:0010975	regulation of neuron projection development	31/729	468/21069	0.0004592	0.02396	0.02203	31	0.04252
GO:0045862	positive regulation of proteolysis	29/729	428/21069	0.000482	0.02487	0.02286	29	0.03978
GO:0090713	immunological memory process	6/729	30/21069	0.0004903	0.025	0.02298	6	0.00823
GO:0032732	positive regulation of interleukin-1 production	12/729	112/21069	0.0005029	0.02536	0.02331	12	0.01646
GO:0042088	T-helper 1 type immune response	8/729	55/21069	0.0005713	0.028	0.02574	8	0.01097
GO:0050691	regulation of defense response to virus by host	8/729	55/21069	0.0005713	0.028	0.02574	8	0.01097
GO:0032731	positive regulation of interleukin-1 beta production	11/729	98/21069	0.000574	0.028	0.02574	11	0.01509
GO:0001959	regulation of cytokine-mediated signaling pathway	17/729	201/21069	0.0006492	0.031	0.02849	17	0.02332
GO:0048002	antigen processing and presentation of peptide antigen	17/729	201/21069	0.0006492	0.031	0.02849	17	0.02332
GO:0035774	positive regulation of insulin secretion involved in cellular response to glucose stimulus	6/729	32/21069	0.0007055	0.03333	0.03064	6	0.00823
GO:0046632	alpha-beta T cell differentiation	13/729	133/21069	0.0007229	0.03342	0.03072	13	0.01783
GO:0007157	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	8/729	57/21069	0.0007297	0.03342	0.03072	8	0.01097
GO:0097479	synaptic vesicle localization	8/729	57/21069	0.0007297	0.03342	0.03072	8	0.01097
GO:0098911	regulation of ventricular cardiac muscle cell action potential	4/729	13/21069	0.0007917	0.03589	0.03299	4	0.005487
GO:0050870	positive regulation of T cell activation	26/729	380/21069	0.0008026	0.03602	0.03311	26	0.03567

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is clathrin-coated endocytic vesicle membrane (5.820535e-05), and the highest (among the lowest 10) is clathrin-coated vesicle membrane (0.0009372613). The ratio is 16.10267, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0030669	clathrin-coated endocytic vesicle membrane	19/775	129/22283	1.098e-07	5.821e-05	4.902e-05	19	0.02452
GO:0042613	MHC class II protein complex	16/775	98/22283	2.603e-07	5.983e-05	5.038e-05	16	0.02065
GO:0032588	trans-Golgi network membrane	21/775	166/22283	3.386e-07	5.983e-05	5.038e-05	21	0.0271
GO:0045334	clathrin-coated endocytic vesicle	19/775	148/22283	9.707e-07	0.0001286	0.0001083	19	0.02452
GO:0005802	trans-Golgi network	30/775	333/22283	2.152e-06	0.0002281	0.0001921	30	0.03871
GO:0030658	transport vesicle membrane	29/775	334/22283	6.519e-06	0.0005758	0.0004849	29	0.03742
GO:0071556	integral component of lumenal side of endoplasmic reticulum membrane	16/775	127/22283	8.789e-06	0.0005823	0.0004903	16	0.02065
GO:0098553	lumenal side of endoplasmic reticulum membrane	16/775	127/22283	8.789e-06	0.0005823	0.0004903	16	0.02065
GO:0098576	lumenal side of membrane	16/775	134/22283	1.746e-05	0.0009373	0.0007893	16	0.02065
GO:0030665	clathrin-coated vesicle membrane	20/775	196/22283	1.768e-05	0.0009373	0.0007893	20	0.02581
GO:0042611	MHC protein complex	16/775	142/22283	3.605e-05	0.001737	0.001463	16	0.02065
GO:0016010	dystrophin-associated glycoprotein complex	6/775	20/22283	4.429e-05	0.001956	0.001647	6	0.007742
GO:0016342	catenin complex	7/775	32/22283	9.427e-05	0.003843	0.003236	7	0.009032
GO:0012507	ER to Golgi transport vesicle membrane	16/775	155/22283	0.000104	0.003938	0.003316	16	0.02065
GO:0030136	clathrin-coated vesicle	23/775	279/22283	0.0001259	0.004448	0.003746	23	0.02968
GO:0001772	immunological synapse	9/775	58/22283	0.0001643	0.005438	0.004579	9	0.01161
GO:0090665	glycoprotein complex	6/775	25/22283	0.0001744	0.005438	0.004579	6	0.007742
GO:0098791	Golgi apparatus subcompartment	33/775	484/22283	0.0002006	0.005905	0.004973	33	0.04258
GO:0097060	synaptic membrane	29/775	408/22283	0.0002412	0.006729	0.005667	29	0.03742
GO:0098984	neuron to neuron synapse	27/775	383/22283	0.000443	0.01163	0.009794	27	0.03484
GO:0031902	late endosome membrane	17/775	194/22283	0.0004608	0.01163	0.009794	17	0.02194
GO:0042383	sarcolemma	14/775	147/22283	0.0006283	0.01508	0.0127	14	0.01806
GO:0005604	basement membrane	11/775	99/22283	0.0006546	0.01508	0.0127	11	0.01419
GO:0032279	asymmetric synapse	25/775	357/22283	0.000781	0.01725	0.01452	25	0.03226
GO:0030134	COPII-coated ER to Golgi transport vesicle	16/775	188/22283	0.0009167	0.01943	0.01637	16	0.02065
GO:0030863	cortical cytoskeleton	12/775	120/22283	0.0009795	0.01957	0.01648	12	0.01548
GO:0034702	ion channel complex	23/775	323/22283	0.0009968	0.01957	0.01648	23	0.02968
GO:1990351	transporter complex	29/775	447/22283	0.001043	0.01974	0.01662	29	0.03742
GO:1990531	phospholipid-translocating ATPase complex	4/775	14/22283	0.0011	0.01991	0.01677	4	0.005161
GO:0005938	cell cortex	23/775	326/22283	0.001127	0.01991	0.01677	23	0.02968
GO:0005858	axonemal dynein complex	5/775	24/22283	0.001231	0.02105	0.01773	5	0.006452
GO:0031256	leading edge membrane	16/775	196/22283	0.001422	0.02355	0.01983	16	0.02065
GO:0045211	postsynaptic membrane	21/775	296/22283	0.001694	0.02721	0.02292	21	0.0271
GO:0030662	coated vesicle membrane	21/775	299/22283	0.001915	0.0288	0.02426	21	0.0271
GO:0030672	synaptic vesicle membrane	12/775	130/22283	0.001956	0.0288	0.02426	12	0.01548
GO:0099501	exocytic vesicle membrane	12/775	130/22283	0.001956	0.0288	0.02426	12	0.01548
GO:0098839	postsynaptic density membrane	10/775	100/22283	0.002525	0.03617	0.03046	10	0.0129
GO:0030176	integral component of endoplasmic reticulum membrane	20/775	287/22283	0.002653	0.03701	0.03117	20	0.02581
GO:0014069	postsynaptic density	23/775	351/22283	0.00291	0.03955	0.0333	23	0.02968
GO:0005770	late endosome	22/775	332/22283	0.003102	0.04035	0.03398	22	0.02839
GO:0099572	postsynaptic specialization	24/775	374/22283	0.003122	0.04035	0.03398	24	0.03097
GO:0031227	intrinsic component of endoplasmic reticulum membrane	20/775	295/22283	0.003624	0.04573	0.03851	20	0.02581
GO:0034703	cation channel complex	17/775	236/22283	0.003839	0.04732	0.03985	17	0.02194
GO:0019897	extrinsic component of plasma membrane	14/775	180/22283	0.004249	0.05088	0.04284	14	0.01806
GO:0005741	mitochondrial outer membrane	16/775	219/22283	0.00432	0.05088	0.04284	16	0.02065
GO:0030864	cortical actin cytoskeleton	9/775	92/22283	0.004716	0.05434	0.04576	9	0.01161
GO:0099634	postsynaptic specialization membrane	11/775	128/22283	0.005124	0.05778	0.04865	11	0.01419
GO:1990752	microtubule end	5/775	33/22283	0.005313	0.05867	0.0494	5	0.006452
GO:0031252	cell leading edge	27/775	457/22283	0.005492	0.05897	0.04966	27	0.03484
GO:0036157	outer dynein arm	3/775	11/22283	0.00561	0.05897	0.04966	3	0.003871
GO:0034704	calcium channel complex	8/775	78/22283	0.005675	0.05897	0.04966	8	0.01032
GO:0031968	organelle outer membrane	17/775	248/22283	0.00627	0.0639	0.05381	17	0.02194
GO:0098978	glutamatergic synapse	22/775	354/22283	0.006556	0.06529	0.05498	22	0.02839
GO:0030666	endocytic vesicle membrane	20/775	312/22283	0.006684	0.06529	0.05498	20	0.02581
GO:0019867	outer membrane	17/775	250/22283	0.006775	0.06529	0.05498	17	0.02194
GO:1902495	transmembrane transporter complex	25/775	421/22283	0.006917	0.06547	0.05513	25	0.03226
GO:0044224	juxtaparanode region of axon	3/775	12/22283	0.007288	0.0666	0.05608	3	0.003871
GO:1990454	L-type voltage-gated calcium channel complex	3/775	12/22283	0.007288	0.0666	0.05608	3	0.003871
GO:0030673	axolemma	4/775	23/22283	0.007588	0.06709	0.0565	4	0.005161
GO:0098858	actin-based cell projection	17/775	253/22283	0.007596	0.06709	0.0565	17	0.02194
GO:0032421	stereocilium bundle	7/775	66/22283	0.007875	0.06842	0.05762	7	0.009032
GO:0032433	filopodium tip	4/775	24/22283	0.008859	0.07573	0.06377	4	0.005161
GO:0099061	integral component of postsynaptic density membrane	6/775	53/22283	0.009933	0.08148	0.06861	6	0.007742
GO:0032589	neuron projection membrane	7/775	69/22283	0.009982	0.08148	0.06861	7	0.009032
GO:0099240	intrinsic component of synaptic membrane	13/775	179/22283	0.009992	0.08148	0.06861	13	0.01677
GO:0030135	coated vesicle	24/775	416/22283	0.01119	0.08985	0.07566	24	0.03097
GO:0032154	cleavage furrow	6/775	56/22283	0.01288	0.1004	0.08451	6	0.007742
GO:0099146	intrinsic component of postsynaptic density membrane	6/775	56/22283	0.01288	0.1004	0.08451	6	0.007742
GO:0044753	amphisome	3/775	15/22283	0.01395	0.1058	0.08913	3	0.003871
GO:0032420	stereocilium	6/775	57/22283	0.01398	0.1058	0.08913	6	0.007742
GO:0099699	integral component of synaptic membrane	12/775	168/22283	0.01468	0.1096	0.09227	12	0.01548
GO:0016459	myosin complex	6/775	58/22283	0.01515	0.1115	0.0939	6	0.007742
GO:0070382	exocytic vesicle	16/775	253/22283	0.01603	0.1164	0.09798	16	0.02065
GO:0034705	potassium channel complex	8/775	94/22283	0.01667	0.1194	0.1005	8	0.01032
GO:0008021	synaptic vesicle	15/775	234/22283	0.01729	0.1222	0.1029	15	0.01935
GO:0032153	cell division site	7/775	78/22283	0.01874	0.1307	0.1101	7	0.009032
GO:0098688	parallel fiber to Purkinje cell synapse	3/775	17/22283	0.0198	0.1363	0.1148	3	0.003871
GO:0099060	integral component of postsynaptic specialization membrane	7/775	80/22283	0.02125	0.1444	0.1216	7	0.009032
GO:0044306	neuron projection terminus	10/775	137/22283	0.02153	0.1444	0.1216	10	0.0129
GO:0043083	synaptic cleft	3/775	18/22283	0.02316	0.1534	0.1292	3	0.003871
GO:0098562	cytoplasmic side of membrane	14/775	222/22283	0.02375	0.155	0.1305	14	0.01806
GO:0030055	cell-substrate junction	26/775	493/22283	0.02398	0.155	0.1305	26	0.03355
GO:0005930	axoneme	11/775	161/22283	0.02538	0.1605	0.1352	11	0.01419
GO:0098948	intrinsic component of postsynaptic specialization membrane	7/775	83/22283	0.02544	0.1605	0.1352	7	0.009032
GO:0097014	ciliary plasm	11/775	162/22283	0.02641	0.1642	0.1382	11	0.01419
GO:0000118	histone deacetylase complex	7/775	84/22283	0.02695	0.1642	0.1382	7	0.009032
GO:0008076	voltage-gated potassium channel complex	7/775	84/22283	0.02695	0.1642	0.1382	7	0.009032
GO:0099568	cytoplasmic region	17/775	294/22283	0.02888	0.174	0.1465	17	0.02194
GO:0090543	Flemming body	4/775	34/22283	0.02945	0.1754	0.1477	4	0.005161
GO:0030496	midbody	13/775	209/22283	0.03151	0.1855	0.1562	13	0.01677
GO:0098982	GABA-ergic synapse	7/775	88/22283	0.0336	0.1949	0.1641	7	0.009032
GO:0032838	plasma membrane bounded cell projection cytoplasm	15/775	255/22283	0.03383	0.1949	0.1641	15	0.01935
GO:0030175	filopodium	9/775	128/22283	0.03486	0.1971	0.166	9	0.01161
GO:0032426	stereocilium tip	3/775	21/22283	0.03496	0.1971	0.166	3	0.003871
GO:0035869	ciliary transition zone	6/775	71/22283	0.03687	0.2057	0.1732	6	0.007742
GO:0000781	chromosome, telomeric region	12/775	193/22283	0.03788	0.2091	0.1761	12	0.01548
GO:0030315	T-tubule	5/775	54/22283	0.03916	0.214	0.1802	5	0.006452
GO:0005912	adherens junction	12/775	195/22283	0.04047	0.2189	0.1843	12	0.01548
GO:0044304	main axon	6/775	74/22283	0.04378	0.228	0.192	6	0.007742
GO:0099023	vesicle tethering complex	6/775	74/22283	0.04378	0.228	0.192	6	0.007742

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

Here it is a barplot of most significantly enriched DO categories.

Barplot for enriched categories. Values on top have lower p values.

The most significant category was ‘progressive familial intrahepatic cholestasis’.

4.3 Network of Cancer Genes

No significant results were found in NCG.