Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.
Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.
The analysis has identified:
The stringent criterion (both callers) has left:
99 unique insertions that passed the stringent filtering. (4.7% of the total unique insertions), had at least one occurrence genotyped as 0/0.
These amount to 106 total count (2.7% of filter-passing occurrences).
51 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 58 insertion counts.
Of these fully wrong calls, 44 were only found on a single patient each (86.3% of the 51).
The strict criteria missed calls for 104 unique insertions (4.9%).
These mean a total of 104 occurrences, out of 3 859 calls that passed the stringent filter.
104 unique insertions had more false negative occurrences than positive ones.
The discrepancies between genotyping and the lax filtering is also summarized in the table below.
Criterion | Unique INS with false positives (%) | Total false positives (%) | Unique INS (total) with all false positives | Unique INS with false negatives (%) | Total false negatives (Total positives) | Unique INS with more false negatives than positives |
|---|---|---|---|---|---|---|
Strict | 99 | 106 | 51 | 104 | 104 | 104 |
Lax | 244 | 260 | 169 | 0 | 0 | 0 |
The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.
564 TE insertions were found on all cases in homozygosis.
Position | Length | Type | AF |
|---|---|---|---|
CP068277.2:7 919 418 | 309 | SINE (AluYa5) | 1 |
CP068277.2:17 172 541 | 320 | SINE (AluYe5) | 1 |
CP068277.2:20 992 774 | 316 | SINE (AluYa5) | 1 |
CP068277.2:23 830 977 | 77 | Retroposon (SVA_F) | 1 |
CP068277.2:28 942 968 | 324 | SINE (AluYg6) | 1 |
CP068277.2:38 352 287 | 74 | SINE (FRAM) | 1 |
CP068277.2:46 090 578 | 333 | SINE (AluYb8) | 1 |
CP068277.2:48 071 786 | 132 | Retroposon (SVA_A) | 1 |
CP068277.2:59 284 566 | 318 | SINE (AluYa5) | 1 |
CP068277.2:65 547 882 | 322 | SINE (AluY) | 1 |
CP068277.2:76 472 686 | 281 | SINE (AluYa5) | 1 |
CP068277.2:78 954 901 | 306 | SINE (AluYb9) | 1 |
CP068277.2:79 721 146 | 38 | LTR (THE1D-int) | 1 |
CP068277.2:99 356 764 | 110 | Retroposon (SVA_A) | 1 |
CP068277.2:111 310 370 | 61 | LINE (L1P2) | 1 |
CP068277.2:111 595 921 | 319 | SINE (AluYa5) | 1 |
CP068277.2:117 439 865 | 79 | Retroposon (SVA_F) | 1 |
CP068277.2:118 551 299 | 320 | SINE (AluYa5) | 1 |
CP068277.2:147 616 749 | 173 | LINE (L1P1) | 1 |
CP068277.2:147 621 768 | 315 | SINE (AluYa5) | 1 |
CP068277.2:149 352 606 | 291 | SINE (AluYb8) | 1 |
CP068277.2:158 899 112 | 27 | LINE (L1P) | 1 |
CP068277.2:165 036 498 | 272 | SINE (AluYa5) | 1 |
CP068277.2:178 395 729 | 46 | Retroposon (SVA_F) | 1 |
CP068277.2:181 662 904 | 47 | Retroposon (SVA_F) | 1 |
CP068277.2:192 243 097 | 40 | LTR (LTR12D) | 1 |
CP068277.2:209 987 115 | 121 | SINE (AluSz6) | 1 |
CP068277.2:210 459 290 | 89 | SINE (AluJb) | 1 |
CP068277.2:216 985 245 | 311 | SINE (AluYk2) | 1 |
CP068277.2:218 986 191 | 316 | SINE (AluYk2) | 1 |
CP068277.2:230 329 881 | 304 | SINE (AluYb8) | 1 |
CP068277.2:237 215 622 | 307 | SINE (AluYa5) | 1 |
CP068277.2:241 802 064 | 37 | SINE (Alu) | 1 |
CP068276.2:120 305 | 96 | Retroposon (SVA_F) | 1 |
CP068276.2:2 546 464 | 315 | SINE (AluYe5) | 1 |
CP068276.2:5 444 371 | 326 | SINE (AluYb8) | 1 |
CP068276.2:6 398 847 | 319 | SINE (AluYa5) | 1 |
CP068276.2:13 196 975 | 45 | LTR (HERVH-int) | 1 |
CP068276.2:13 955 731 | 75 | LTR (MER57-int) | 1 |
CP068276.2:34 814 746 | 242 | SINE (AluYa5) | 1 |
CP068276.2:42 231 893 | 29 | SINE (Alu) | 1 |
CP068276.2:44 593 483 | 124 | Retroposon (SVA_F) | 1 |
CP068276.2:44 593 484 | 84 | Retroposon (SVA_F) | 1 |
CP068276.2:44 594 092 | 211 | Retroposon (SVA_F) | 1 |
CP068276.2:44 604 010 | 316 | SINE (AluYa5) | 1 |
CP068276.2:50 018 029 | 132 | SINE (AluY) | 1 |
CP068276.2:54 460 543 | 251 | SINE (AluY) | 1 |
CP068276.2:64 261 102 | 61 | LTR (HERVH-int) | 1 |
CP068276.2:65 116 309 | 305 | SINE (AluYc) | 1 |
CP068276.2:65 348 770 | 48 | Retroposon (SVA_F) | 1 |
CP068276.2:74 292 982 | 328 | SINE (AluY) | 1 |
CP068276.2:102 198 725 | 315 | SINE (AluYa5) | 1 |
CP068276.2:107 771 785 | 320 | SINE (AluYa5) | 1 |
CP068276.2:121 551 351 | 57 | LTR (MSTA) | 1 |
CP068276.2:123 008 476 | 317 | SINE (AluYa5) | 1 |
CP068276.2:123 048 382 | 50 | LINE (L1M1) | 1 |
CP068276.2:123 569 366 | 133 | SINE (AluSp) | 1 |
CP068276.2:123 667 376 | 330 | SINE (AluYb8) | 1 |
CP068276.2:125 860 606 | 118 | LTR (LTR12C) | 1 |
CP068276.2:126 051 006 | 332 | SINE (AluYa5) | 1 |
CP068276.2:131 521 066 | 317 | SINE (AluYe5) | 1 |
CP068276.2:137 865 383 | 60 | SINE (AluY) | 1 |
CP068276.2:141 752 398 | 57 | LINE (L1M2) | 1 |
CP068276.2:145 037 173 | 324 | SINE (AluYb8) | 1 |
CP068276.2:150 220 893 | 319 | SINE (AluYa5) | 1 |
CP068276.2:153 756 655 | 320 | SINE (AluY) | 1 |
CP068276.2:156 746 251 | 39 | Retroposon (SVA_B) | 1 |
CP068276.2:158 030 254 | 325 | SINE (AluYb9) | 1 |
CP068276.2:169 505 778 | 323 | SINE (AluY) | 1 |
CP068276.2:170 612 969 | 307 | SINE (AluYk12) | 1 |
CP068276.2:175 359 957 | 318 | SINE (AluYa5) | 1 |
CP068276.2:179 802 853 | 48 | Retroposon (SVA_F) | 1 |
CP068276.2:182 940 163 | 309 | SINE (AluYa5) | 1 |
CP068276.2:184 038 383 | 33 | LINE (L1P4) | 1 |
CP068276.2:192 183 565 | 317 | SINE (AluYa5) | 1 |
CP068276.2:192 186 027 | 325 | SINE (AluYa5) | 1 |
CP068276.2:196 356 056 | 275 | SINE (AluYa5) | 1 |
CP068276.2:197 233 937 | 327 | SINE (AluYb8) | 1 |
CP068276.2:198 513 690 | 136 | SINE (AluSg) | 1 |
CP068276.2:200 963 886 | 45 | SINE (FRAM) | 1 |
CP068276.2:208 081 694 | 324 | SINE (AluJb) | 1 |
CP068276.2:208 519 865 | 314 | SINE (AluYa5) | 1 |
CP068276.2:214 127 683 | 242 | SINE (AluYa5) | 1 |
CP068276.2:215 319 682 | 77 | Retroposon (SVA_F) | 1 |
CP068276.2:215 369 785 | 171 | SINE (AluYb9) | 1 |
CP068276.2:232 042 724 | 319 | SINE (AluYk2) | 1 |
CP068276.2:233 687 447 | 149 | SINE (AluSx) | 1 |
CP068275.2:1 238 682 | 63 | LTR (HERVH-int) | 1 |
CP068275.2:20 459 977 | 66 | LTR (LTR25-int) | 1 |
CP068275.2:24 054 053 | 254 | SINE (AluYi6) | 1 |
CP068275.2:26 747 814 | 317 | SINE (AluYk2) | 1 |
CP068275.2:29 581 534 | 319 | SINE (AluYb8) | 1 |
CP068275.2:32 897 378 | 95 | LINE (L1M4) | 1 |
CP068275.2:34 675 723 | 40 | LINE (L1MA1) | 1 |
CP068275.2:36 799 001 | 305 | SINE (AluYc) | 1 |
CP068275.2:38 085 678 | 298 | Retroposon (SVA_F) | 1 |
CP068275.2:38 119 250 | 134 | SINE (AluJb) | 1 |
CP068275.2:45 517 532 | 316 | SINE (AluY) | 1 |
CP068275.2:48 240 089 | 116 | Retroposon (SVA_F) | 1 |
CP068275.2:50 833 539 | 38 | Retroposon (SVA_C) | 1 |
CP068275.2:50 871 694 | 344 | SINE (AluY) | 1 |
CP068275.2:58 330 973 | 39 | Retroposon (SVA_B) | 1 |
CP068275.2:61 714 843 | 176 | Retroposon (SVA_F) | 1 |
CP068275.2:63 598 884 | 311 | SINE (AluYb8) | 1 |
CP068275.2:65 941 603 | 35 | LINE (L1PA6) | 1 |
CP068275.2:66 758 056 | 136 | SINE (AluJr4) | 1 |
CP068275.2:66 961 938 | 131 | LINE (L1P3) | 1 |
CP068275.2:68 858 645 | 274 | SINE (AluYe5) | 1 |
CP068275.2:68 878 080 | 290 | SINE (AluYa5) | 1 |
CP068275.2:80 303 273 | 45 | LINE (L1PREC2) | 1 |
CP068275.2:82 376 966 | 107 | LTR (MER4E1) | 1 |
CP068275.2:83 763 966 | 254 | LINE (L1PA8A) | 1 |
CP068275.2:96 460 083 | 73 | Retroposon (SVA_A) | 1 |
CP068275.2:100 887 226 | 232 | LTR (LTR8) | 1 |
CP068275.2:112 582 135 | 127 | LINE (L1PA16) | 1 |
CP068275.2:114 228 331 | 327 | SINE (AluYb9) | 1 |
CP068275.2:114 926 706 | 49 | LINE (L1P3) | 1 |
CP068275.2:118 025 861 | 332 | SINE (AluYa8) | 1 |
CP068275.2:125 139 153 | 324 | SINE (AluYb8) | 1 |
CP068275.2:127 413 483 | 317 | SINE (AluYa5) | 1 |
CP068275.2:132 084 525 | 48 | Retroposon (SVA_F) | 1 |
CP068275.2:132 210 422 | 310 | SINE (AluYb8) | 1 |
CP068275.2:136 876 080 | 57 | LINE (L1MCa) | 1 |
CP068275.2:143 552 741 | 318 | SINE (AluYa5) | 1 |
CP068275.2:147 504 053 | 77 | LTR (LTR12D) | 1 |
CP068275.2:152 131 587 | 97 | Retroposon (SVA_F) | 1 |
CP068275.2:152 131 779 | 252 | Retroposon (SVA_E) | 1 |
CP068275.2:174 782 780 | 119 | LTR (LTR12C) | 1 |
CP068275.2:189 926 620 | 313 | SINE (AluYk2) | 1 |
CP068275.2:191 982 178 | 322 | SINE (AluYb8) | 1 |
CP068275.2:198 426 294 | 61 | LINE (L1M1) | 1 |
CP068275.2:200 460 370 | 71 | SINE (AluJb) | 1 |
CP068274.2:4 318 462 | 65 | LTR (LTR12_v) | 1 |
CP068274.2:4 626 805 | 51 | SINE (MIR) | 1 |
CP068274.2:20 388 569 | 987 | LINE (L1M5) | 1 |
CP068274.2:38 777 883 | 75 | Retroposon (SVA_B) | 1 |
CP068274.2:38 778 081 | 181 | Retroposon (SVA_E) | 1 |
CP068274.2:39 675 502 | 162 | SINE (AluSx) | 1 |
CP068274.2:44 835 889 | 174 | SINE (AluYb8) | 1 |
CP068274.2:58 431 094 | 242 | SINE (AluYa5) | 1 |
CP068274.2:58 620 850 | 322 | SINE (AluYb8) | 1 |
CP068274.2:59 545 991 | 194 | SINE (AluYc) | 1 |
CP068274.2:67 669 116 | 731 | LTR (LTR25-int) | 1 |
CP068274.2:67 788 030 | 290 | SINE (AluY) | 1 |
CP068274.2:71 961 165 | 151 | SINE (AluYb8) | 1 |
CP068274.2:73 581 960 | 186 | LINE (L1PA2) | 1 |
CP068274.2:88 719 288 | 308 | SINE (AluYa5) | 1 |
CP068274.2:89 207 100 | 34 | SINE (Alu) | 1 |
CP068274.2:93 980 210 | 61 | LTR (MLT1A) | 1 |
CP068274.2:98 264 406 | 317 | SINE (AluYb8) | 1 |
CP068274.2:99 966 117 | 316 | SINE (AluYb9) | 1 |
CP068274.2:119 058 267 | 27 | LTR (THE1-int) | 1 |
CP068274.2:123 023 912 | 318 | SINE (AluYa5) | 1 |
CP068274.2:136 997 523 | 414 | LINE (L1HS) | 1 |
CP068274.2:137 536 644 | 411 | LTR (HERVL40-int) | 1 |
CP068274.2:142 173 781 | 48 | Retroposon (SVA_F) | 1 |
CP068274.2:145 008 461 | 48 | LTR (THE1D) | 1 |
CP068274.2:147 791 504 | 326 | SINE (AluYa5) | 1 |
CP068274.2:153 595 372 | 142 | LINE (L1P3) | 1 |
CP068274.2:153 696 604 | 324 | SINE (AluYk11) | 1 |
CP068274.2:153 984 112 | 97 | Retroposon (SVA_F) | 1 |
CP068274.2:154 538 658 | 126 | Retroposon (SVA_F) | 1 |
CP068274.2:158 831 227 | 103 | SINE (AluYd8) | 1 |
CP068274.2:166 928 648 | 313 | SINE (AluYb8) | 1 |
CP068274.2:171 244 192 | 111 | LTR (MER4A) | 1 |
CP068274.2:176 462 509 | 318 | SINE (AluY) | 1 |
CP068274.2:181 862 706 | 314 | SINE (AluYi6) | 1 |
CP068274.2:184 287 169 | 205 | Retroposon (SVA_A) | 1 |
CP068274.2:188 770 999 | 325 | SINE (AluSx) | 1 |
CP068274.2:188 804 270 | 286 | SINE (AluYk12) | 1 |
CP068273.2:1 857 117 | 311 | SINE (AluYb8) | 1 |
CP068273.2:6 146 641 | 311 | SINE (AluY) | 1 |
CP068273.2:12 123 868 | 302 | SINE (AluYa5) | 1 |
CP068273.2:12 256 876 | 29 | LINE (L1PA14) | 1 |
CP068273.2:16 655 697 | 310 | SINE (AluYg6) | 1 |
CP068273.2:24 017 957 | 285 | SINE (AluY) | 1 |
CP068273.2:25 758 140 | 221 | LINE (L1P1) | 1 |
CP068273.2:26 290 891 | 59 | LTR (LTR5A) | 1 |
CP068273.2:27 677 538 | 122 | SINE (AluJb) | 1 |
CP068273.2:29 034 801 | 73 | Retroposon (SVA_B) | 1 |
CP068273.2:38 033 737 | 91 | LTR (Harlequin-int) | 1 |
CP068273.2:43 769 164 | 68 | LTR (MER50B) | 1 |
CP068273.2:43 795 329 | 321 | SINE (AluYb8) | 1 |
CP068273.2:56 842 940 | 47 | Retroposon (SVA_F) | 1 |
CP068273.2:66 799 023 | 343 | Retroposon (SVA_F) | 1 |
CP068273.2:69 790 093 | 650 | LINE (L1HS) | 1 |
CP068273.2:69 886 321 | 61 | Retroposon (SVA_D) | 1 |
CP068273.2:80 745 714 | 312 | SINE (AluY) | 1 |
CP068273.2:83 675 995 | 306 | SINE (AluYh7) | 1 |
CP068273.2:100 778 994 | 312 | SINE (AluY) | 1 |
CP068273.2:103 260 583 | 41 | LTR (LTR12E) | 1 |
CP068273.2:105 102 556 | 38 | LTR (LTR19A) | 1 |
CP068273.2:108 350 710 | 102 | LINE (L1M5) | 1 |
CP068273.2:111 960 940 | 186 | SINE (AluYc) | 1 |
CP068273.2:118 013 084 | 306 | SINE (AluY) | 1 |
CP068273.2:121 495 295 | 313 | SINE (AluY) | 1 |
CP068273.2:134 951 042 | 305 | SINE (AluYa5) | 1 |
CP068273.2:138 669 937 | 65 | LTR (LTR12) | 1 |
CP068273.2:139 924 858 | 293 | SINE (AluSx) | 1 |
CP068273.2:143 069 211 | 312 | SINE (AluYa5) | 1 |
CP068273.2:147 526 118 | 318 | SINE (AluYb8) | 1 |
CP068273.2:180 746 045 | 173 | SINE (AluY) | 1 |
CP068272.2:5 217 730 | 320 | SINE (AluY) | 1 |
CP068272.2:5 704 809 | 356 | Retroposon (SVA_F) | 1 |
CP068272.2:5 938 114 | 338 | SINE (AluYa5) | 1 |
CP068272.2:10 902 109 | 134 | SINE (AluSz) | 1 |
CP068272.2:13 394 506 | 330 | SINE (AluYb8) | 1 |
CP068272.2:15 598 802 | 39 | Retroposon (SVA_E) | 1 |
CP068272.2:18 770 685 | 314 | SINE (AluY) | 1 |
CP068272.2:19 027 502 | 322 | SINE (AluYb9) | 1 |
CP068272.2:28 094 493 | 329 | SINE (AluYb8) | 1 |
CP068272.2:30 339 365 | 39 | Retroposon (SVA_D) | 1 |
CP068272.2:32 343 356 | 294 | SINE (AluSc) | 1 |
CP068272.2:32 604 181 | 308 | SINE (AluY) | 1 |
CP068272.2:42 430 460 | 160 | SINE (AluSg4) | 1 |
CP068272.2:43 757 249 | 314 | SINE (AluYa5) | 1 |
CP068272.2:45 127 498 | 324 | SINE (AluYe5) | 1 |
CP068272.2:45 835 182 | 327 | SINE (AluY) | 1 |
CP068272.2:54 692 012 | 140 | SINE (AluSg) | 1 |
CP068272.2:74 838 911 | 39 | Retroposon (SVA_B) | 1 |
CP068272.2:86 651 704 | 330 | SINE (AluY) | 1 |
CP068272.2:100 823 615 | 45 | Retroposon (SVA_F) | 1 |
CP068272.2:105 950 363 | 309 | SINE (AluYa5) | 1 |
CP068272.2:107 853 091 | 317 | SINE (AluYb8) | 1 |
CP068272.2:109 130 963 | 270 | Retroposon (SVA_E) | 1 |
CP068272.2:109 208 497 | 105 | SINE (AluJb) | 1 |
CP068272.2:115 951 896 | 105 | SINE (AluSc) | 1 |
CP068272.2:119 490 091 | 295 | SINE (AluYa5) | 1 |
CP068272.2:138 121 232 | 276 | SINE (AluYa5) | 1 |
CP068272.2:142 199 747 | 131 | LTR (LTR12) | 1 |
CP068272.2:157 199 315 | 307 | SINE (AluY) | 1 |
CP068272.2:158 278 908 | 327 | SINE (AluYb8) | 1 |
CP068272.2:159 090 611 | 39 | LTR (LTR8) | 1 |
CP068271.2:2 382 179 | 77 | Retroposon (SVA_F) | 1 |
CP068271.2:6 790 042 | 96 | Retroposon (SVA_F) | 1 |
CP068271.2:12 372 986 | 319 | SINE (AluYb8) | 1 |
CP068271.2:12 396 187 | 31 | SINE (AluSg) | 1 |
CP068271.2:14 540 334 | 319 | SINE (AluYb8) | 1 |
CP068271.2:29 929 681 | 37 | LTR (HERVH-int) | 1 |
CP068271.2:38 447 512 | 50 | LTR (LTR1) | 1 |
CP068271.2:38 626 104 | 315 | SINE (AluYa5) | 1 |
CP068271.2:38 630 323 | 336 | SINE (AluYb8) | 1 |
CP068271.2:39 867 657 | 329 | SINE (AluYb8) | 1 |
CP068271.2:48 018 075 | 321 | SINE (AluYa5) | 1 |
CP068271.2:50 732 080 | 90 | LINE (L1PA4) | 1 |
CP068271.2:56 334 427 | 321 | SINE (AluYb8) | 1 |
CP068271.2:67 832 962 | 315 | SINE (AluYa5) | 1 |
CP068271.2:77 895 803 | 300 | SINE (AluSg) | 1 |
CP068271.2:78 216 802 | 319 | SINE (AluYa5) | 1 |
CP068271.2:81 683 820 | 41 | LINE (L1M4) | 1 |
CP068271.2:83 623 827 | 326 | SINE (AluYj4) | 1 |
CP068271.2:84 052 406 | 316 | SINE (AluYa5) | 1 |
CP068271.2:84 568 345 | 317 | SINE (AluYg6) | 1 |
CP068271.2:85 626 331 | 314 | SINE (AluY) | 1 |
CP068271.2:86 522 262 | 271 | LINE (L1HS) | 1 |
CP068271.2:90 001 659 | 316 | SINE (AluYa5) | 1 |
CP068271.2:91 220 124 | 318 | SINE (AluYa5) | 1 |
CP068271.2:103 838 055 | 127 | SINE (AluJb) | 1 |
CP068271.2:103 937 188 | 127 | SINE (AluJb) | 1 |
CP068271.2:109 206 992 | 118 | LTR (LTR12D) | 1 |
CP068271.2:110 968 118 | 328 | SINE (AluYb8) | 1 |
CP068271.2:115 628 403 | 310 | SINE (AluYa5) | 1 |
CP068271.2:119 569 637 | 298 | SINE (AluYa5) | 1 |
CP068271.2:119 758 768 | 316 | SINE (AluYe5) | 1 |
CP068271.2:121 741 949 | 31 | SINE (Alu) | 1 |
CP068271.2:130 830 383 | 317 | SINE (AluSx) | 1 |
CP068271.2:132 541 792 | 144 | SINE (AluJb) | 1 |
CP068271.2:134 472 994 | 155 | SINE (AluSx) | 1 |
CP068271.2:136 812 007 | 334 | SINE (AluYa5) | 1 |
CP068271.2:146 522 790 | 32 | LINE (L1P1) | 1 |
CP068271.2:153 713 300 | 130 | SINE (AluSx) | 1 |
CP068271.2:155 766 181 | 330 | SINE (AluYb8) | 1 |
CP068270.2:6 485 699 | 318 | SINE (AluYe5) | 1 |
CP068270.2:9 270 409 | 324 | SINE (AluYa5) | 1 |
CP068270.2:12 907 672 | 329 | SINE (AluYa5) | 1 |
CP068270.2:23 488 427 | 39 | SINE (Alu) | 1 |
CP068270.2:34 580 253 | 67 | LINE (L1M3) | 1 |
CP068270.2:37 215 036 | 30 | DNA (Tigger2a) | 1 |
CP068270.2:41 686 987 | 324 | SINE (AluYb8) | 1 |
CP068270.2:60 716 533 | 315 | SINE (AluYa5) | 1 |
CP068270.2:62 176 579 | 46 | Retroposon (SVA_F) | 1 |
CP068270.2:66 658 366 | 175 | Retroposon (SVA_F) | 1 |
CP068270.2:87 814 363 | 48 | Retroposon (SVA_F) | 1 |
CP068270.2:93 464 962 | 163 | LINE (L1PB2) | 1 |
CP068270.2:98 966 642 | 39 | Retroposon (SVA_D) | 1 |
CP068270.2:99 578 329 | 325 | SINE (AluSx) | 1 |
CP068270.2:107 844 447 | 325 | SINE (AluYb8) | 1 |
CP068270.2:128 443 757 | 46 | Retroposon (SVA_F) | 1 |
CP068270.2:132 610 615 | 40 | LTR (LTR12E) | 1 |
CP068269.2:6 664 828 | 135 | SINE (AluY) | 1 |
CP068269.2:6 795 499 | 39 | Retroposon (SVA_D) | 1 |
CP068269.2:6 804 463 | 98 | Retroposon (SVA_F) | 1 |
CP068269.2:7 855 153 | 327 | SINE (AluYb9) | 1 |
CP068269.2:8 652 319 | 274 | SINE (AluYa5) | 1 |
CP068269.2:9 145 491 | 320 | SINE (AluYb8) | 1 |
CP068269.2:16 401 598 | 326 | SINE (AluY) | 1 |
CP068269.2:21 052 363 | 330 | SINE (AluYa5) | 1 |
CP068269.2:30 020 771 | 69 | LINE (L1M3) | 1 |
CP068269.2:33 442 084 | 36 | Retroposon (SVA_F) | 1 |
CP068269.2:34 156 745 | 66 | Retroposon (SVA_F) | 1 |
CP068269.2:41 137 102 | 327 | SINE (AluYa5) | 1 |
CP068269.2:41 633 588 | 68 | LINE (L1PA2) | 1 |
CP068269.2:41 696 039 | 86 | LINE (L1P4b) | 1 |
CP068269.2:84 265 383 | 48 | SINE (Alu) | 1 |
CP068269.2:87 062 332 | 178 | SINE (AluYb8) | 1 |
CP068269.2:91 269 591 | 318 | SINE (AluY) | 1 |
CP068269.2:92 388 707 | 326 | SINE (AluYb8) | 1 |
CP068269.2:96 285 779 | 31 | SINE (Alu) | 1 |
CP068269.2:112 443 781 | 81 | SINE (AluSz) | 1 |
CP068269.2:138 384 259 | 298 | LINE (L1M4) | 1 |
CP068269.2:143 939 557 | 43 | SINE (AluYi6) | 1 |
CP068268.2:1 248 623 | 326 | SINE (AluYa5) | 1 |
CP068268.2:3 057 186 | 34 | SINE (AluYh3) | 1 |
CP068268.2:5 118 840 | 47 | LTR (MER39B) | 1 |
CP068268.2:9 275 805 | 273 | Retroposon (SVA_A) | 1 |
CP068268.2:21 756 235 | 35 | SINE (AluJb) | 1 |
CP068268.2:29 201 482 | 188 | LTR (MLT1F-int) | 1 |
CP068268.2:46 272 895 | 39 | Retroposon (SVA_C) | 1 |
CP068268.2:55 788 354 | 125 | LINE (L1M4) | 1 |
CP068268.2:68 711 145 | 32 | LTR (MSTB2) | 1 |
CP068268.2:87 084 164 | 304 | SINE (AluY) | 1 |
CP068268.2:96 787 855 | 315 | SINE (AluYa5) | 1 |
CP068268.2:97 822 112 | 47 | Retroposon (SVA_F) | 1 |
CP068268.2:105 697 311 | 328 | SINE (AluY) | 1 |
CP068268.2:116 480 342 | 27 | LINE (L1P1) | 1 |
CP068268.2:120 078 047 | 39 | Retroposon (SVA_C) | 1 |
CP068268.2:123 851 456 | 319 | SINE (AluY) | 1 |
CP068268.2:127 459 264 | 66 | LINE (L1M2) | 1 |
CP068268.2:131 025 575 | 97 | LINE (L1PA7) | 1 |
CP068267.2:473 330 | 320 | SINE (AluYe5) | 1 |
CP068267.2:9 522 489 | 36 | SINE (AluY) | 1 |
CP068267.2:9 857 725 | 318 | SINE (AluYb8) | 1 |
CP068267.2:22 361 771 | 123 | LINE (L1PA16) | 1 |
CP068267.2:25 682 675 | 345 | SINE (AluYa5) | 1 |
CP068267.2:33 652 002 | 320 | SINE (AluYk2) | 1 |
CP068267.2:44 657 278 | 50 | SINE (AluYh7) | 1 |
CP068267.2:47 253 972 | 175 | Retroposon (SVA_F) | 1 |
CP068267.2:55 579 693 | 317 | SINE (AluY) | 1 |
CP068267.2:56 473 791 | 317 | SINE (AluYg6) | 1 |
CP068267.2:60 485 034 | 79 | LINE (L1HS) | 1 |
CP068267.2:63 882 701 | 259 | LINE (L1MB8) | 1 |
CP068267.2:74 485 830 | 59 | SINE (AluJb) | 1 |
CP068267.2:75 339 543 | 77 | Retroposon (SVA_F) | 1 |
CP068267.2:77 028 418 | 177 | Retroposon (SVA_F) | 1 |
CP068267.2:80 466 705 | 125 | LTR (LTR12D) | 1 |
CP068267.2:82 117 597 | 39 | Retroposon (SVA_C) | 1 |
CP068267.2:95 142 638 | 42 | SINE (Alu) | 1 |
CP068267.2:96 512 809 | 42 | LTR (LTR46) | 1 |
CP068267.2:101 555 768 | 328 | SINE (AluYb8) | 1 |
CP068267.2:104 919 972 | 320 | SINE (AluYa5) | 1 |
CP068267.2:106 732 181 | 290 | SINE (AluY) | 1 |
CP068267.2:118 715 549 | 133 | SINE (AluSx) | 1 |
CP068267.2:120 365 075 | 37 | SINE (AluYm1) | 1 |
CP068267.2:125 878 132 | 153 | LINE (L1PA10) | 1 |
CP068267.2:130 127 567 | 38 | Retroposon (SVA_B) | 1 |
CP068266.2:413 743 | 31 | SINE (AluSp) | 1 |
CP068266.2:5 668 028 | 308 | SINE (AluYd8) | 1 |
CP068266.2:6 807 792 | 255 | SINE (AluYk2) | 1 |
CP068266.2:7 721 119 | 143 | SINE (AluSg) | 1 |
CP068266.2:7 830 662 | 336 | SINE (AluYb8) | 1 |
CP068266.2:8 456 751 | 319 | SINE (AluYg6) | 1 |
CP068266.2:8 608 370 | 115 | Retroposon (SVA_B) | 1 |
CP068266.2:8 608 845 | 46 | Retroposon (SVA_F) | 1 |
CP068266.2:12 283 010 | 97 | Retroposon (SVA_F) | 1 |
CP068266.2:14 045 351 | 192 | Retroposon (SVA_C) | 1 |
CP068266.2:29 543 251 | 313 | SINE (AluYa5) | 1 |
CP068266.2:30 029 848 | 199 | SINE (AluYa5) | 1 |
CP068266.2:41 239 964 | 345 | LINE (L1P3) | 1 |
CP068266.2:44 984 372 | 311 | SINE (AluYa5) | 1 |
CP068266.2:45 611 156 | 323 | SINE (AluYb8) | 1 |
CP068266.2:51 007 643 | 447 | SINE (AluSx) | 1 |
CP068266.2:56 751 565 | 48 | Retroposon (SVA_F) | 1 |
CP068266.2:64 720 062 | 176 | SINE (AluYa5) | 1 |
CP068266.2:70 065 499 | 63 | LTR (HERVH-int) | 1 |
CP068266.2:71 354 899 | 23 | LTR (LTR12E) | 1 |
CP068266.2:77 423 086 | 101 | SINE (MIRb) | 1 |
CP068266.2:77 981 522 | 327 | SINE (AluYb8) | 1 |
CP068266.2:86 830 422 | 142 | SINE (AluSx) | 1 |
CP068266.2:87 458 390 | 315 | SINE (AluY) | 1 |
CP068266.2:94 256 702 | 321 | SINE (AluYa5) | 1 |
CP068266.2:96 285 798 | 317 | SINE (AluYa5) | 1 |
CP068266.2:96 952 164 | 313 | SINE (AluYa5) | 1 |
CP068266.2:98 553 558 | 310 | SINE (AluSx) | 1 |
CP068266.2:101 881 504 | 99 | SINE (AluYb8) | 1 |
CP068266.2:126 429 324 | 314 | SINE (AluYb8) | 1 |
CP068265.2:5 252 040 | 71 | LINE (L1MB2) | 1 |
CP068265.2:13 715 682 | 196 | SINE (AluYb8) | 1 |
CP068265.2:19 743 748 | 49 | LTR (LTR3B_v) | 1 |
CP068265.2:20 642 557 | 145 | Retroposon (SVA_E) | 1 |
CP068265.2:20 642 901 | 48 | Retroposon (SVA_F) | 1 |
CP068265.2:42 185 736 | 1 644 | Retroposon (SVA_F) | 1 |
CP068265.2:45 366 990 | 318 | SINE (AluYa5) | 1 |
CP068265.2:45 691 032 | 310 | SINE (AluY) | 1 |
CP068265.2:45 736 391 | 76 | Retroposon (SVA_F) | 1 |
CP068265.2:49 104 652 | 46 | LINE (L1PA8) | 1 |
CP068265.2:50 293 367 | 95 | Retroposon (SVA_F) | 1 |
CP068265.2:60 433 754 | 322 | SINE (AluYa5) | 1 |
CP068265.2:60 661 632 | 155 | LINE (L1PA8A) | 1 |
CP068265.2:62 171 725 | 317 | SINE (AluYa5) | 1 |
CP068265.2:69 509 379 | 322 | SINE (AluYb8) | 1 |
CP068265.2:81 206 374 | 108 | LTR (MLT1A1) | 1 |
CP068265.2:82 608 310 | 219 | SINE (AluYc) | 1 |
CP068265.2:84 838 216 | 167 | SINE (AluYa5) | 1 |
CP068265.2:85 705 616 | 304 | SINE (AluYa5) | 1 |
CP068265.2:85 943 033 | 288 | SINE (AluYa5) | 1 |
CP068265.2:88 073 850 | 315 | SINE (AluYa5) | 1 |
CP068265.2:88 973 266 | 148 | SINE (AluY) | 1 |
CP068265.2:89 698 651 | 101 | LTR (LTR12C) | 1 |
CP068265.2:98 181 350 | 134 | SINE (AluYk2) | 1 |
CP068265.2:100 191 900 | 100 | LTR (LTR12C) | 1 |
CP068265.2:109 388 985 | 314 | SINE (AluYb8) | 1 |
CP068265.2:109 862 683 | 128 | LTR (LTR12C) | 1 |
CP068265.2:109 863 304 | 40 | LTR (LTR12E) | 1 |
CP068265.2:110 189 655 | 246 | SINE (AluY) | 1 |
CP068265.2:112 115 809 | 312 | SINE (AluYa5) | 1 |
CP068264.2:4 080 751 | 330 | SINE (AluYb8) | 1 |
CP068264.2:4 176 442 | 306 | SINE (AluYa5) | 1 |
CP068264.2:18 410 919 | 164 | SINE (AluSx4) | 1 |
CP068264.2:19 797 762 | 40 | LTR (LTR12B) | 1 |
CP068264.2:20 430 427 | 311 | SINE (AluYa5) | 1 |
CP068264.2:22 030 070 | 438 | LINE (L1HS) | 1 |
CP068264.2:25 634 689 | 47 | Retroposon (SVA_F) | 1 |
CP068264.2:25 671 371 | 318 | SINE (AluY) | 1 |
CP068264.2:28 610 960 | 305 | SINE (AluYa5) | 1 |
CP068264.2:29 128 780 | 87 | SINE (AluJo) | 1 |
CP068264.2:29 131 238 | 313 | SINE (AluY) | 1 |
CP068264.2:31 745 103 | 39 | Retroposon (SVA_C) | 1 |
CP068264.2:34 300 938 | 324 | SINE (AluYa5) | 1 |
CP068264.2:34 313 688 | 131 | SINE (AluYe5) | 1 |
CP068264.2:50 176 931 | 283 | SINE (AluYa5) | 1 |
CP068264.2:53 285 736 | 306 | SINE (AluYa5) | 1 |
CP068264.2:67 764 612 | 311 | SINE (AluSx) | 1 |
CP068264.2:70 959 770 | 39 | Retroposon (SVA_F) | 1 |
CP068264.2:88 788 220 | 312 | SINE (AluYa5) | 1 |
CP068264.2:92 910 435 | 53 | SINE (Alu) | 1 |
CP068263.2:20 376 616 | 44 | SINE (Alu) | 1 |
CP068263.2:25 263 076 | 324 | SINE (AluYb8) | 1 |
CP068263.2:32 444 264 | 321 | SINE (AluY) | 1 |
CP068263.2:34 360 211 | 346 | SINE (AluYa5) | 1 |
CP068263.2:38 489 398 | 36 | Retroposon (SVA_F) | 1 |
CP068263.2:38 614 143 | 315 | SINE (AluYg6) | 1 |
CP068263.2:53 913 589 | 228 | Retroposon (SVA_F) | 1 |
CP068263.2:56 106 612 | 319 | SINE (AluYc) | 1 |
CP068263.2:58 727 456 | 317 | SINE (AluY) | 1 |
CP068263.2:71 508 181 | 321 | SINE (AluY) | 1 |
CP068263.2:86 307 146 | 147 | Retroposon (SVA_E) | 1 |
CP068263.2:92 039 791 | 305 | SINE (AluYa5) | 1 |
CP068263.2:95 045 999 | 328 | SINE (AluYa5) | 1 |
CP068263.2:97 321 467 | 49 | SINE (Alu) | 1 |
CP068263.2:98 667 707 | 310 | SINE (AluY) | 1 |
CP068262.2:480 325 | 311 | SINE (AluSx) | 1 |
CP068262.2:4 839 789 | 42 | SINE (Alu) | 1 |
CP068262.2:15 116 749 | 85 | SINE (AluSc) | 1 |
CP068262.2:21 521 201 | 122 | SINE (AluJb) | 1 |
CP068262.2:24 129 334 | 325 | SINE (AluY) | 1 |
CP068262.2:62 994 200 | 43 | SINE (AluJo) | 1 |
CP068262.2:63 015 018 | 315 | SINE (AluYa5) | 1 |
CP068262.2:64 555 275 | 134 | SINE (AluSz) | 1 |
CP068262.2:64 559 334 | 55 | SINE (AluSx3) | 1 |
CP068262.2:75 622 940 | 53 | SINE (AluSg) | 1 |
CP068262.2:83 862 434 | 133 | SINE (AluSc8) | 1 |
CP068261.2:455 384 | 96 | Retroposon (SVA_F) | 1 |
CP068261.2:3 433 087 | 132 | SINE (AluSg) | 1 |
CP068261.2:5 924 812 | 314 | SINE (AluYa5) | 1 |
CP068261.2:11 880 696 | 59 | LTR (HERVH-int) | 1 |
CP068261.2:37 220 145 | 335 | SINE (AluYb8) | 1 |
CP068261.2:38 008 694 | 192 | SINE (AluYc) | 1 |
CP068261.2:51 788 427 | 313 | SINE (AluYb8) | 1 |
CP068261.2:53 829 064 | 311 | SINE (AluYa5) | 1 |
CP068261.2:55 582 094 | 669 | LINE (L1PREC2) | 1 |
CP068261.2:61 447 465 | 325 | SINE (AluY) | 1 |
CP068261.2:75 514 650 | 307 | SINE (AluYg6) | 1 |
CP068261.2:75 907 696 | 46 | SINE (AluJr4) | 1 |
CP068261.2:75 935 935 | 315 | SINE (AluYb8) | 1 |
CP068261.2:76 696 269 | 95 | SINE (AluY) | 1 |
CP068261.2:78 133 410 | 332 | SINE (AluYb8) | 1 |
CP068261.2:82 055 352 | 326 | SINE (AluYb8) | 1 |
CP068260.2:8 797 339 | 111 | SINE (AluJo) | 1 |
CP068260.2:29 765 946 | 318 | SINE (AluYb8) | 1 |
CP068260.2:35 273 621 | 317 | SINE (AluYa5) | 1 |
CP068260.2:39 128 268 | 317 | SINE (AluYa5) | 1 |
CP068260.2:40 963 076 | 315 | SINE (AluY) | 1 |
CP068260.2:46 361 667 | 324 | SINE (AluYb8) | 1 |
CP068260.2:46 381 044 | 32 | SINE (Alu) | 1 |
CP068260.2:53 663 279 | 320 | SINE (AluYb8) | 1 |
CP068260.2:53 996 308 | 73 | LINE (L1PBa) | 1 |
CP068260.2:66 072 639 | 337 | SINE (AluY) | 1 |
CP068260.2:76 087 428 | 324 | SINE (AluYb8) | 1 |
CP068260.2:77 479 251 | 472 | LINE (L1HS) | 1 |
CP068259.2:646 264 | 72 | SINE (AluSp) | 1 |
CP068259.2:773 677 | 308 | SINE (AluJb) | 1 |
CP068259.2:2 535 989 | 124 | SINE (AluJb) | 1 |
CP068259.2:6 141 006 | 264 | SINE (AluYb8) | 1 |
CP068259.2:6 151 665 | 290 | SINE (AluSc8) | 1 |
CP068259.2:6 976 775 | 329 | SINE (AluYb8) | 1 |
CP068259.2:7 740 152 | 314 | SINE (AluYb8) | 1 |
CP068259.2:16 391 116 | 140 | SINE (AluJb) | 1 |
CP068259.2:18 052 543 | 47 | Retroposon (SVA_F) | 1 |
CP068259.2:29 865 974 | 312 | SINE (AluYb8) | 1 |
CP068259.2:36 653 353 | 175 | Retroposon (SVA_F) | 1 |
CP068259.2:36 780 217 | 299 | SINE (AluY) | 1 |
CP068259.2:49 334 643 | 307 | SINE (AluY) | 1 |
CP068259.2:53 674 286 | 101 | SINE (AluJb) | 1 |
CP068259.2:54 049 533 | 135 | SINE (AluSx) | 1 |
CP068259.2:55 665 437 | 134 | SINE (AluSx) | 1 |
CP068259.2:56 876 654 | 36 | SINE (Alu) | 1 |
CP068259.2:58 069 652 | 330 | SINE (AluJb) | 1 |
CP068259.2:59 606 629 | 325 | SINE (AluYa5) | 1 |
CP068258.2:5 422 575 | 49 | LTR (MSTB) | 1 |
CP068258.2:5 544 074 | 303 | SINE (AluYc) | 1 |
CP068258.2:5 544 134 | 289 | SINE (AluYc) | 1 |
CP068258.2:16 945 493 | 337 | SINE (AluY) | 1 |
CP068258.2:16 956 782 | 41 | SINE (AluYa5) | 1 |
CP068258.2:21 237 843 | 1 434 | LINE (L1M3) | 1 |
CP068258.2:30 503 817 | 38 | Retroposon (SVA_C) | 1 |
CP068258.2:30 946 834 | 128 | LTR (LTR5A) | 1 |
CP068258.2:31 430 118 | 812 | LTR (PRIMA41-int) | 1 |
CP068258.2:31 915 417 | 390 | LINE (L1P1) | 1 |
CP068258.2:38 114 785 | 94 | SINE (AluSz6) | 1 |
CP068258.2:55 429 289 | 321 | SINE (AluYb8) | 1 |
CP068258.2:62 091 491 | 125 | SINE (AluSc) | 1 |
CP068258.2:62 926 797 | 317 | SINE (AluYa5) | 1 |
CP068258.2:63 187 711 | 320 | SINE (AluYb8) | 1 |
CP068258.2:63 442 811 | 39 | Retroposon (SVA_D) | 1 |
CP068257.2:11 757 340 | 320 | SINE (AluYa5) | 1 |
CP068257.2:12 279 099 | 187 | Retroposon (SVA_B) | 1 |
CP068257.2:20 801 787 | 336 | SINE (AluYb8) | 1 |
CP068257.2:21 725 996 | 321 | SINE (AluYk2) | 1 |
CP068257.2:34 874 715 | 321 | SINE (AluYb8) | 1 |
CP068257.2:38 974 145 | 118 | SINE (AluYa5) | 1 |
CP068257.2:42 828 950 | 134 | SINE (AluSz) | 1 |
CP068256.2:17 900 864 | 326 | SINE (AluYb8) | 1 |
CP068256.2:22 593 267 | 314 | SINE (AluYa5) | 1 |
CP068256.2:25 763 740 | 142 | SINE (AluSc8) | 1 |
CP068256.2:29 242 941 | 314 | SINE (AluYa5) | 1 |
CP068256.2:32 276 540 | 316 | SINE (AluY) | 1 |
CP068256.2:32 611 949 | 103 | LTR (MER11C) | 1 |
CP068256.2:32 967 701 | 40 | LTR (HERVH-int) | 1 |
CP068256.2:34 820 706 | 63 | SINE (AluYh7) | 1 |
CP068256.2:43 634 478 | 325 | SINE (AluYb8) | 1 |
CP068255.2:247 895 | 164 | SINE (AluJb) | 1 |
CP068255.2:295 108 | 164 | SINE (AluSx) | 1 |
CP068255.2:3 778 903 | 57 | LINE (L1PB1) | 1 |
CP068255.2:22 237 816 | 315 | SINE (AluY) | 1 |
CP068255.2:24 293 369 | 129 | Retroposon (SVA_F) | 1 |
CP068255.2:25 517 583 | 333 | SINE (AluYb8) | 1 |
CP068255.2:31 581 182 | 315 | SINE (AluY) | 1 |
CP068255.2:45 336 671 | 221 | LINE (L1M4b) | 1 |
CP068255.2:45 683 115 | 125 | Retroposon (SVA_F) | 1 |
CP068255.2:52 216 963 | 324 | SINE (AluYb8) | 1 |
CP068255.2:56 310 479 | 309 | LINE (L1P2) | 1 |
CP068255.2:56 311 246 | 122 | LINE (L1P1) | 1 |
CP068255.2:65 312 828 | 122 | LINE (L2a) | 1 |
CP068255.2:83 656 504 | 86 | LINE (L1MC5) | 1 |
CP068255.2:84 713 986 | 311 | SINE (AluYa5) | 1 |
CP068255.2:85 441 294 | 40 | LTR (LTR12B) | 1 |
CP068255.2:85 459 363 | 450 | LINE (L1P4) | 1 |
CP068255.2:86 915 067 | 295 | SINE (AluYb8) | 1 |
CP068255.2:116 082 428 | 329 | SINE (AluY) | 1 |
CP068255.2:146 566 678 | 210 | LINE (L1P2) | 1 |
CP086569.2:242 043 | 168 | SINE (AluSx) | 1 |
CP086569.2:544 722 | 162 | Retroposon (SVA_E) | 1 |
CP086569.2:739 730 | 308 | SINE (AluSx) | 1 |
CP086569.2:949 758 | 135 | SINE (AluSq) | 1 |
Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.
This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.
Repeat | Repeat | Unique | Total | Total |
|---|---|---|---|---|
DNA | hAT | 4 | 7 | 7 |
TcMar | 1 | 2 | 2 | |
LINE | L1 | 103 | 199 | 192 |
L2 | 2 | 4 | 2 | |
LTR | ERV1 | 42 | 72 | 67 |
ERVK | 5 | 10 | 10 | |
ERVL | 5 | 10 | 10 | |
Retroposon | SVA | 151 | 279 | 244 |
SINE | Alu | 783 | 1 501 | 1 488 |
MIR | 1 | 2 | 2 | |
Total | - | 1 097 | 2 086 | 2 024 |
Name | Unique | Total | Total |
|---|---|---|---|
SVA A | 13 | 21 | 20 |
SVA B | 4 | 8 | 8 |
SVA D | 8 | 15 | 13 |
SVA E | 23 | 42 | 38 |
SVA F | 101 | 189 | 161 |
SVA F1 | 2 | 4 | 4 |
Total | 151 | 279 | 244 |
Name | Unique | Total | Total |
|---|---|---|---|
Alu | 4 | 8 | 8 |
AluJb | 21 | 39 | 39 |
AluJo | 4 | 7 | 6 |
AluJr4 | 1 | 2 | 1 |
AluSc | 4 | 7 | 7 |
AluSc8 | 3 | 6 | 6 |
AluSg | 13 | 25 | 21 |
AluSg4 | 2 | 4 | 4 |
AluSp | 2 | 4 | 4 |
AluSq | 4 | 8 | 8 |
AluSq2 | 1 | 2 | 2 |
AluSx | 36 | 64 | 61 |
AluSx1 | 1 | 2 | 2 |
AluSx3 | 2 | 4 | 4 |
AluSx4 | 3 | 5 | 4 |
AluSz | 5 | 10 | 10 |
AluSz6 | 2 | 4 | 4 |
AluY | 161 | 311 | 310 |
AluYa5 | 248 | 475 | 474 |
AluYa8 | 6 | 12 | 12 |
AluYb8 | 146 | 280 | 280 |
AluYb9 | 22 | 43 | 43 |
AluYc | 9 | 18 | 18 |
AluYd8 | 5 | 9 | 9 |
AluYe5 | 24 | 48 | 48 |
AluYg6 | 14 | 28 | 28 |
AluYh7 | 3 | 5 | 5 |
AluYi6 | 2 | 4 | 4 |
AluYj4 | 2 | 4 | 4 |
AluYk11 | 3 | 6 | 6 |
AluYk12 | 3 | 5 | 5 |
AluYk2 | 21 | 40 | 39 |
AluYk3 | 4 | 8 | 8 |
FLAM C | 1 | 2 | 2 |
FRAM | 1 | 2 | 2 |
Total | 783 | 1 501 | 1 488 |
Name | Unique | Total | Total |
|---|---|---|---|
L1HS | 54 | 105 | 103 |
L1M2 | 2 | 4 | 4 |
L1M2a | 1 | 2 | 1 |
L1M3 | 1 | 2 | 2 |
L1M3b | 1 | 2 | 2 |
L1M4 | 3 | 6 | 5 |
L1M5 | 1 | 2 | 2 |
L1MA1 | 1 | 2 | 2 |
L1MA5 | 1 | 2 | 2 |
L1MA8 | 1 | 2 | 2 |
L1MB2 | 1 | 2 | 2 |
L1MB8 | 1 | 2 | 2 |
L1MC | 2 | 4 | 4 |
L1MC3 | 1 | 2 | 1 |
L1MC4 | 2 | 4 | 4 |
L1MC5 | 1 | 2 | 2 |
L1MD3 | 1 | 1 | 1 |
L1P1 | 5 | 9 | 8 |
L1P2 | 3 | 4 | 4 |
L1P3 | 6 | 12 | 11 |
L1P3b | 1 | 2 | 2 |
L1PA10 | 1 | 2 | 2 |
L1PA16 | 2 | 4 | 4 |
L1PA2 | 4 | 8 | 8 |
L1PA7 | 2 | 4 | 4 |
L1PB | 2 | 4 | 4 |
L1PB1 | 1 | 2 | 2 |
L1PBa1 | 1 | 2 | 2 |
Total | 103 | 199 | 192 |
Position | Length | Type | Gene | Annotation | Occurrences |
|---|---|---|---|---|---|
CP068255.2:1 234 402 | 119 | SINE (Alu) | SLC25A6 | Intron | 2 |
CP068255.2:21 930 360 | 320 | SINE (Alu) | PTCHD1-AS | Intron | 1 |
CP068255.2:22 237 816 | 315 | SINE (Alu) | PTCHD1-AS | Intron | 2 |
CP068255.2:24 293 369 | 129 | Retroposon (SVA) | POLA1 | Intron | 2 |
CP068255.2:30 855 306 | 302 | SINE (Alu) | DMD | Intron | 1 |
CP068255.2:31 581 182 | 315 | SINE (Alu) | DMD | Intron | 2 |
CP068255.2:32 882 843 | 308 | SINE (Alu) | DMD | Intron | 2 |
CP068255.2:83 656 504 | 86 | LINE (L1) | SATL1 | Intron | 2 |
CP068255.2:83 683 173 | 329 | SINE (Alu) | ZNF711 | Intron | 2 |
CP068255.2:84 713 986 | 311 | SINE (Alu) | DACH2 | Intron | 2 |
CP068255.2:90 623 038 | 135 | SINE (Alu) | PCDH11X | Intron | 2 |
CP068255.2:100 344 903 | 51 | LINE (L1) | ZMAT1 | Intron | 2 |
CP068255.2:120 735 396 | 327 | SINE (Alu) | LOC101928359 | Intron | 2 |
CP068255.2:145 121 988 | 788 | LINE (L1) | LOC101928832 | Intron | 2 |
CP068255.2:247 895 | 164 | SINE (Alu) | LOC102724521 | Intron | 2 |
CP068255.2:295 108 | 164 | SINE (Alu) | LOC102724521 | Intron | 2 |
CP068256.2:7 583 739 | 316 | SINE (Alu) | LOC128966699 | Promoter | 2 |
CP068256.2:18 235 398 | 356 | SINE (Alu) | SLC25A18 | Intron | 2 |
CP068256.2:18 700 162 | 327 | SINE (Alu) | LINC01634 | Promoter | 2 |
CP068256.2:20 929 750 | 292 | SINE (Alu) | MED15 | Intron | 2 |
CP068256.2:24 409 917 | 309 | SINE (Alu) | GSTT4 | Intron | 2 |
CP068256.2:24 455 919 | 189 | SINE (Alu) | GSTTP2 | Intron | 1 |
CP068256.2:24 456 566 | 301 | SINE (Alu) | GSTTP2 | Intron | 1 |
CP068256.2:25 446 692 | 336 | SINE (Alu) | KIAA1671 | Intron | 1 |
CP068256.2:25 461 789 | 294 | SINE (Alu) | KIAA1671 | Intron | 2 |
CP068256.2:25 532 879 | 98 | SINE (Alu) | KIAA1671 | Intron | 2 |
CP068256.2:27 234 737 | 2 593 | Retroposon (SVA) | MIATNB | Intron | 2 |
CP068256.2:28 841 478 | 330 | SINE (Alu) | TTC28 | Intron | 2 |
CP068256.2:29 242 941 | 314 | SINE (Alu) | CCDC117 | Intron | 2 |
CP068256.2:32 056 349 | 295 | Retroposon (SVA) | SFI1 | Intron | 2 |
CP068256.2:32 056 357 | 158 | Retroposon (SVA) | SFI1 | Intron | 1 |
CP068256.2:32 276 540 | 316 | SINE (Alu) | DEPDC5 | Intron | 2 |
CP068256.2:34 820 706 | 63 | SINE (Alu) | LOC105373012 | Promoter | 2 |
CP068256.2:35 243 538 | 321 | SINE (Alu) | LINC02885 | Intron | 2 |
CP068256.2:36 775 979 | 321 | SINE (Alu) | MYH9 | Intron | 2 |
CP068256.2:39 828 297 | 62 | LTR (ERV1) | SYNGR1 | Intron | 2 |
CP068256.2:41 793 756 | 312 | SINE (Alu) | ZC3H7B | Intron | 2 |
CP068256.2:43 299 732 | 314 | SINE (Alu) | ARFGAP3 | Intron | 1 |
CP068256.2:43 634 478 | 325 | SINE (Alu) | TSPO | Intron | 2 |
CP068256.2:44 411 840 | 1 144 | LINE (L1) | PNPLA3 | Intron | 2 |
CP068257.2:12 279 099 | 187 | Retroposon (SVA) | LOC110091776 | Promoter | 2 |
CP068257.2:12 625 686 | 326 | SINE (Alu) | ABCC13 | Intron | 2 |
CP068257.2:13 335 804 | 328 | SINE (Alu) | NRIP1 | Intron | 2 |
CP068257.2:13 911 959 | 389 | LINE (L1) | LOC105369302 | Intron | 2 |
CP068257.2:15 595 054 | 1 306 | LINE (L1) | LOC107985511 | Intron | 2 |
CP068257.2:16 504 323 | 3 401 | LINE (L1) | CHODL | Intron | 2 |
CP068257.2:20 621 840 | 6 639 | LINE (L1) | LOC107985508 | Intron | 2 |
CP068257.2:21 725 996 | 321 | SINE (Alu) | D21S2088E | Intron | 2 |
CP068257.2:25 547 133 | 321 | SINE (Alu) | LOC102724355 | Intron | 2 |
CP068257.2:27 375 046 | 47 | Retroposon (SVA) | RWDD2B | Intron | 1 |
CP068257.2:34 874 715 | 321 | SINE (Alu) | CLDN14-AS1 | Intron | 2 |
CP068257.2:38 467 340 | 326 | SINE (Alu) | DSCAM | Intron | 2 |
CP068257.2:38 974 145 | 118 | SINE (Alu) | DSCAM | Intron | 2 |
CP068257.2:41 308 511 | 52 | LTR (ERV1) | ERVH48-1 | Intron | 2 |
CP068258.2:3 292 707 | 309 | SINE (Alu) | DNAAF9 | Intron | 2 |
CP068258.2:8 504 792 | 330 | SINE (Alu) | PLCB1 | Intron | 2 |
CP068258.2:15 176 135 | 290 | SINE (Alu) | MACROD2 | Intron | 2 |
CP068258.2:16 549 972 | 324 | LINE (L1) | KIF16B | Intron | 2 |
CP068258.2:21 237 843 | 1 434 | LINE (L1) | KIZ | Intron | 2 |
CP068258.2:25 627 226 | 445 | Retroposon (SVA) | NINL | Intron | 2 |
CP068258.2:36 934 692 | 180 | SINE (Alu) | PROCR | Intron | 2 |
CP068258.2:37 925 585 | 291 | SINE (Alu) | EPB41L1 | Intron | 2 |
CP068258.2:38 114 785 | 94 | SINE (Alu) | DLGAP4 | Intron | 2 |
CP068258.2:62 091 491 | 125 | SINE (Alu) | MIR646HG | Intron | 2 |
CP068258.2:63 187 711 | 320 | SINE (Alu) | CDH4 | Intron | 2 |
CP068259.2:1 997 543 | 311 | SINE (Alu) | LOC107985278 | Intron | 2 |
CP068259.2:2 535 989 | 124 | SINE (Alu) | GNG7 | Intron | 2 |
CP068259.2:3 262 720 | 317 | SINE (Alu) | CELF5 | Intron | 2 |
CP068259.2:6 141 006 | 264 | SINE (Alu) | ACSBG2 | Intron | 2 |
CP068259.2:6 151 665 | 290 | SINE (Alu) | ACSBG2 | Intron | 2 |
CP068259.2:6 913 159 | 321 | SINE (Alu) | ADGRE1 | Intron | 1 |
CP068259.2:6 976 775 | 329 | SINE (Alu) | ADGRE4P | Intron | 2 |
CP068259.2:13 829 928 | 123 | Retroposon (SVA) | LOC105372284 | Intron | 2 |
CP068259.2:17 856 397 | 166 | SINE (Alu) | MAP1S | Intron | 1 |
CP068259.2:18 265 756 | 319 | SINE (Alu) | MAST3 | Intron | 1 |
CP068259.2:20 352 161 | 49 | Retroposon (SVA) | LOC124908076 | Intron | 1 |
CP068259.2:21 703 198 | 266 | SINE (Alu) | LOC124904670 | Intron | 2 |
CP068259.2:21 715 982 | 318 | SINE (Alu) | LOC101929007 | Intron | 2 |
CP068259.2:21 716 142 | 146 | SINE (Alu) | LOC101929007 | Intron | 1 |
CP068259.2:22 003 892 | 95 | Retroposon (SVA) | LOC105372324 | Intron | 1 |
CP068259.2:22 772 645 | 314 | SINE (Alu) | ZNF492 | Promoter | 2 |
CP068259.2:22 775 504 | 308 | SINE (Alu) | ZNF492 | Intron | 1 |
CP068259.2:23 273 105 | 316 | SINE (Alu) | ZNF730 | Intron | 2 |
CP068259.2:23 988 201 | 50 | Retroposon (SVA) | RPSA2 | Intron | 2 |
CP068259.2:31 895 943 | 963 | LTR (ERVK) | VSTM2B-DT | Intron | 2 |
CP068259.2:32 477 728 | 304 | SINE (Alu) | URI1 | Intron | 2 |
CP068259.2:38 771 243 | 2 483 | Retroposon (SVA) | ZNF146 | Intron | 2 |
CP068259.2:41 072 000 | 115 | SINE (Alu) | SPINT2 | Intron | 1 |
CP068259.2:44 182 655 | 293 | SINE (Alu) | B9D2 | Intron | 2 |
CP068259.2:46 477 902 | 317 | SINE (Alu) | PLAUR | Intron | 2 |
CP068259.2:47 849 106 | 92 | SINE (Alu) | RELB | Intron | 2 |
CP068259.2:54 049 533 | 135 | SINE (Alu) | LOC105372442 | Intron | 2 |
CP068259.2:54 361 759 | 312 | SINE (Alu) | LINC01872 | Intron | 2 |
CP068259.2:54 446 027 | 327 | SINE (Alu) | ETFB | Intron | 2 |
CP068259.2:55 665 437 | 134 | SINE (Alu) | ZNF701 | Intron | 2 |
CP068259.2:58 069 652 | 330 | SINE (Alu) | NLRP2 | Intron | 2 |
CP068259.2:58 093 129 | 49 | Retroposon (SVA) | NLRP2 | Intron | 1 |
CP068259.2:58 093 134 | 49 | Retroposon (SVA) | NLRP2 | Intron | 1 |
CP068259.2:59 549 110 | 314 | SINE (Alu) | ZNF667 | Intron | 2 |
CP068259.2:59 606 629 | 325 | SINE (Alu) | ZNF471 | Intron | 2 |
CP068259.2:61 203 201 | 330 | SINE (Alu) | ZSCAN18 | Intron | 2 |
CP068259.2:61 501 622 | 164 | Retroposon (SVA) | ZNF584 | Intron | 1 |
CP068259.2:61 501 716 | 163 | Retroposon (SVA) | ZNF584 | Intron | 1 |
CP068259.2:430 825 | 132 | SINE (Alu) | CIMAP1D | Intron | 2 |
CP068259.2:646 264 | 72 | SINE (Alu) | PRSS57 | Intron | 2 |
CP068259.2:773 677 | 308 | SINE (Alu) | PLPPR3 | Intron | 2 |
CP068260.2:3 032 121 | 146 | SINE (Alu) | EMILIN2 | Intron | 2 |
CP068260.2:8 797 339 | 111 | SINE (Alu) | RAB12 | Intron | 2 |
CP068260.2:9 388 660 | 334 | SINE (Alu) | ANKRD12 | Intron | 2 |
CP068260.2:11 073 229 | 317 | SINE (Alu) | PIEZO2 | Intron | 1 |
CP068260.2:11 651 340 | 412 | SINE (Alu) | LINC01255 | Promoter | 1 |
CP068260.2:11 651 340 | 412 | SINE (Alu) | LINC01255 | Intron | 1 |
CP068260.2:27 152 079 | 317 | SINE (Alu) | CHST9 | Intron | 2 |
CP068260.2:35 273 621 | 317 | SINE (Alu) | MAPRE2 | Intron | 2 |
CP068260.2:45 956 220 | 79 | SINE (Alu) | LOC105372093 | Intron | 2 |
CP068260.2:49 775 450 | 48 | Retroposon (SVA) | LIPG | Intron | 1 |
CP068260.2:50 011 675 | 175 | Retroposon (SVA) | ACAA2 | Intron | 2 |
CP068260.2:50 011 874 | 176 | Retroposon (SVA) | ACAA2 | Intron | 1 |
CP068260.2:52 608 255 | 321 | SINE (Alu) | DCC | Intron | 2 |
CP068260.2:53 663 279 | 320 | SINE (Alu) | DCC | Intron | 2 |
CP068260.2:55 681 933 | 319 | SINE (Alu) | MIR4529 | Promoter | 2 |
CP068260.2:55 681 933 | 319 | SINE (Alu) | TCF4-AS1 | Intron | 2 |
CP068260.2:56 003 042 | 326 | SINE (Alu) | LOC105372130 | Intron | 2 |
CP068260.2:56 891 790 | 330 | SINE (Alu) | WDR7 | Intron | 2 |
CP068260.2:57 843 094 | 101 | LTR (ERV1) | ATP8B1-AS1 | Intron | 1 |
CP068260.2:57 843 462 | 203 | LTR (ERV1) | ATP8B1-AS1 | Intron | 1 |
CP068260.2:57 914 128 | 143 | SINE (Alu) | ATP8B1 | Intron | 2 |
CP068260.2:62 249 430 | 314 | SINE (Alu) | PIGN | Intron | 2 |
CP068260.2:66 072 639 | 337 | SINE (Alu) | CDH7 | Intron | 2 |
CP068260.2:69 709 407 | 313 | SINE (Alu) | DOK6 | Intron | 2 |
CP068260.2:70 644 924 | 312 | SINE (Alu) | RPS2P6 | Promoter | 2 |
CP068260.2:70 644 924 | 312 | SINE (Alu) | LOC124908034 | Intron | 2 |
CP068260.2:71 698 063 | 52 | LINE (L1) | LOC107985179 | Intron | 2 |
CP068260.2:74 496 908 | 63 | LINE (L2) | CYB5A | Intron | 1 |
CP068261.2:2 178 843 | 134 | SINE (Alu) | SMG6 | Intron | 2 |
CP068261.2:3 433 087 | 132 | SINE (Alu) | TRPV3 | Intron | 2 |
CP068261.2:10 207 978 | 330 | SINE (Alu) | LOC107985004 | Intron | 1 |
CP068261.2:13 440 691 | 297 | SINE (Alu) | HS3ST3A1 | Intron | 1 |
CP068261.2:16 232 917 | 317 | SINE (Alu) | PIGL | Intron | 2 |
CP068261.2:19 987 007 | 2 668 | Retroposon (SVA) | SPECC1 | Intron | 1 |
CP068261.2:20 934 063 | 96 | Retroposon (SVA) | LOC124900389 | Intron | 1 |
CP068261.2:38 008 694 | 192 | SINE (Alu) | AATF | Intron | 2 |
CP068261.2:42 963 138 | 105 | SINE (Alu) | DHX58 | Intron | 2 |
CP068261.2:45 034 218 | 255 | Retroposon (SVA) | ASB16-AS1 | Intron | 2 |
CP068261.2:49 291 096 | 323 | SINE (Alu) | SKAP1 | Intron | 2 |
CP068261.2:49 989 170 | 224 | Retroposon (SVA) | B4GALNT2 | Intron | 2 |
CP068261.2:52 840 126 | 314 | SINE (Alu) | CA10 | Intron | 2 |
CP068261.2:59 594 282 | 71 | LINE (L1) | RAD51C | Intron | 1 |
CP068261.2:61 447 465 | 325 | SINE (Alu) | LINC01999 | Intron | 2 |
CP068261.2:69 968 391 | 311 | SINE (Alu) | ABCA6 | Intron | 2 |
CP068261.2:74 299 029 | 163 | SINE (Alu) | SDK2 | Intron | 1 |
CP068261.2:74 299 196 | 166 | SINE (Alu) | SDK2 | Intron | 1 |
CP068261.2:75 514 650 | 307 | SINE (Alu) | CD300E | Promoter | 2 |
CP068261.2:75 514 650 | 307 | SINE (Alu) | LOC101928343 | Intron | 2 |
CP068261.2:75 935 935 | 315 | SINE (Alu) | KCTD2 | Intron | 2 |
CP068261.2:76 696 269 | 95 | SINE (Alu) | UNK | Intron | 2 |
CP068261.2:78 886 239 | 313 | SINE (Alu) | TNRC6C | Intron | 2 |
CP068261.2:79 403 508 | 181 | SINE (Alu) | DNAH17 | Intron | 2 |
CP068261.2:82 055 352 | 326 | SINE (Alu) | AATK | Intron | 2 |
CP068261.2:82 527 912 | 322 | SINE (Alu) | NPLOC4 | Promoter | 2 |
CP068261.2:82 527 912 | 322 | SINE (Alu) | NPLOC4 | Intron | 2 |
CP068261.2:83 676 846 | 1 409 | Retroposon (SVA) | TBCD | Intron | 2 |
CP068261.2:455 384 | 96 | Retroposon (SVA) | VPS53 | Intron | 2 |
CP068261.2:718 177 | 313 | SINE (Alu) | NXN | Intron | 2 |
CP068261.2:799 798 | 134 | SINE (Alu) | NXN | Intron | 2 |
CP068262.2:5 324 686 | 317 | SINE (Alu) | RBFOX1 | Intron | 2 |
CP068262.2:6 773 894 | 1 405 | LINE (L1) | RBFOX1 | Intron | 1 |
CP068262.2:11 372 328 | 118 | Retroposon (SVA) | LOC105371082 | Intron | 2 |
CP068262.2:11 372 367 | 294 | Retroposon (SVA) | LOC105371082 | Intron | 2 |
CP068262.2:15 116 749 | 85 | SINE (Alu) | PDXDC1 | Intron | 2 |
CP068262.2:18 253 306 | 134 | SINE (Alu) | LOC105376751 | Intron | 2 |
CP068262.2:19 149 959 | 345 | SINE (Alu) | SYT17 | Intron | 2 |
CP068262.2:20 697 234 | 328 | SINE (Alu) | ACSM3 | Intron | 2 |
CP068262.2:21 163 027 | 321 | SINE (Alu) | LOC105371123 | Intron | 2 |
CP068262.2:22 366 704 | 185 | SINE (Alu) | NPIPB4 | Intron | 1 |
CP068262.2:22 425 396 | 310 | SINE (Alu) | LOC105371126 | Intron | 2 |
CP068262.2:24 129 334 | 325 | SINE (Alu) | PRKCB | Intron | 2 |
CP068262.2:25 129 781 | 63 | LINE (L2) | SLC5A11 | Intron | 1 |
CP068262.2:28 953 796 | 65 | SINE (Alu) | LOC124903790 | Promoter | 2 |
CP068262.2:34 910 910 | 138 | SINE (Alu) | TUBB8P11 | Intron | 1 |
CP068262.2:63 015 018 | 315 | SINE (Alu) | RSPRY1 | Intron | 2 |
CP068262.2:64 052 598 | 317 | SINE (Alu) | CFAP263 | Intron | 1 |
CP068262.2:64 555 275 | 134 | SINE (Alu) | LOC107984867 | Intron | 2 |
CP068262.2:64 559 334 | 55 | SINE (Alu) | LOC107984867 | Intron | 2 |
CP068262.2:67 801 060 | 329 | SINE (Alu) | CDH8 | Intron | 2 |
CP068262.2:75 622 940 | 53 | SINE (Alu) | WWP2 | Intron | 2 |
CP068262.2:81 108 232 | 76 | LINE (L1) | ZNRF1 | Intron | 2 |
CP068262.2:81 211 804 | 307 | SINE (Alu) | ZFP1 | Intron | 2 |
CP068262.2:83 862 434 | 133 | SINE (Alu) | VAT1L | Intron | 2 |
CP068262.2:84 715 226 | 326 | SINE (Alu) | WWOX | Intron | 2 |
CP068262.2:88 943 277 | 312 | SINE (Alu) | CDH13 | Intron | 2 |
CP068262.2:94 530 929 | 337 | SINE (Alu) | ZFPM1 | Intron | 1 |
CP068262.2:95 928 542 | 311 | SINE (Alu) | SPIRE2 | Intron | 1 |
CP068262.2:480 325 | 311 | SINE (Alu) | RAB11FIP3 | Intron | 2 |
CP068263.2:21 696 325 | 308 | SINE (Alu) | LOC107984787 | Intron | 2 |
CP068263.2:23 495 786 | 56 | LTR (ERV1) | ATP10A | Intron | 2 |
CP068263.2:23 497 425 | 72 | LTR (ERV1) | ATP10A | Intron | 2 |
CP068263.2:23 498 708 | 52 | LTR (ERV1) | ATP10A | Intron | 1 |
CP068263.2:23 499 008 | 52 | LTR (ERV1) | ATP10A | Intron | 1 |
CP068263.2:25 263 076 | 324 | SINE (Alu) | GABRG3 | Intron | 2 |
CP068263.2:25 672 331 | 121 | SINE (Alu) | OCA2 | Intron | 2 |
CP068263.2:25 673 162 | 393 | LINE (L1) | OCA2 | Intron | 2 |
CP068263.2:31 536 137 | 6 041 | LINE (L1) | RYR3 | Intron | 2 |
CP068263.2:32 986 718 | 317 | SINE (Alu) | DPH6 | Intron | 2 |
CP068263.2:33 461 727 | 125 | Retroposon (SVA) | DPH6-DT | Intron | 2 |
CP068263.2:33 609 416 | 309 | SINE (Alu) | DPH6-DT | Intron | 2 |
CP068263.2:35 220 952 | 666 | LINE (L1) | LOC105370772 | Intron | 1 |
CP068263.2:36 780 040 | 352 | SINE (Alu) | LOC105370777 | Intron | 2 |
CP068263.2:38 614 143 | 315 | SINE (Alu) | DNAJC17 | Promoter | 2 |
CP068263.2:38 614 143 | 315 | SINE (Alu) | ZFYVE19 | Intron | 2 |
CP068263.2:39 236 166 | 305 | SINE (Alu) | RTF1 | Intron | 2 |
CP068263.2:40 270 159 | 75 | SINE (Alu) | ZNF106 | Intron | 1 |
CP068263.2:43 086 082 | 143 | SINE (Alu) | SLC28A2-AS1 | Intron | 2 |
CP068263.2:43 583 928 | 335 | SINE (Alu) | LOC105370802 | Intron | 2 |
CP068263.2:43 641 520 | 324 | SINE (Alu) | LOC105370802 | Intron | 2 |
CP068263.2:45 153 207 | 326 | SINE (Alu) | SEMA6D | Intron | 2 |
CP068263.2:47 125 591 | 311 | SINE (Alu) | GALK2 | Intron | 2 |
CP068263.2:50 041 588 | 331 | SINE (Alu) | LOC105370820 | Intron | 2 |
CP068263.2:53 913 589 | 228 | Retroposon (SVA) | LOC124903498 | Intron | 1 |
CP068263.2:53 913 807 | 50 | Retroposon (SVA) | LOC124903498 | Intron | 1 |
CP068263.2:55 792 313 | 104 | SINE (Alu) | ALDH1A2 | Intron | 2 |
CP068263.2:56 106 612 | 319 | SINE (Alu) | LOC124907518 | Intron | 2 |
CP068263.2:58 168 194 | 306 | SINE (Alu) | ANXA2 | Intron | 2 |
CP068263.2:58 727 456 | 317 | SINE (Alu) | RORA | Intron | 2 |
CP068263.2:64 043 253 | 324 | SINE (Alu) | MEGF11 | Intron | 2 |
CP068263.2:64 197 247 | 322 | SINE (Alu) | TIPIN | Intron | 2 |
CP068263.2:64 381 413 | 200 | SINE (Alu) | LCTL | Intron | 2 |
CP068263.2:64 824 384 | 330 | SINE (Alu) | SMAD3-DT | Intron | 2 |
CP068263.2:65 174 494 | 317 | SINE (Alu) | IQCH | Intron | 2 |
CP068263.2:71 508 181 | 321 | SINE (Alu) | CD276 | Intron | 2 |
CP068263.2:73 374 856 | 144 | Retroposon (SVA) | PTPN9 | Intron | 2 |
CP068263.2:76 507 733 | 317 | SINE (Alu) | CHRNB4 | Intron | 2 |
CP068263.2:77 366 877 | 313 | SINE (Alu) | LOC105370919 | Promoter | 2 |
CP068263.2:85 217 623 | 159 | SINE (Alu) | LOC102724465 | Intron | 2 |
CP068263.2:92 039 791 | 305 | SINE (Alu) | MCTP2 | Intron | 2 |
CP068263.2:93 349 076 | 291 | SINE (Alu) | LOC105370995 | Intron | 2 |
CP068263.2:95 035 913 | 127 | LINE (L1) | LINC02253 | Intron | 1 |
CP068263.2:95 045 999 | 328 | SINE (Alu) | LINC02253 | Intron | 2 |
CP068263.2:96 121 828 | 565 | LINE (L1) | LINC02351 | Intron | 2 |
CP068263.2:98 667 707 | 310 | SINE (Alu) | ALDH1A3 | Intron | 2 |
CP068264.2:13 913 770 | 329 | SINE (Alu) | OR11H2 | Promoter | 2 |
CP068264.2:14 703 899 | 172 | Retroposon (SVA) | RNASE10 | Intron | 1 |
CP068264.2:15 771 109 | 327 | SINE (Alu) | OR10G3 | Intron | 2 |
CP068264.2:18 051 022 | 79 | LTR (ERV1) | LINC00596 | Intron | 2 |
CP068264.2:18 410 919 | 164 | SINE (Alu) | CHMP4A | Intron | 2 |
CP068264.2:24 879 419 | 6 122 | LINE (L1) | SCFD1 | Intron | 1 |
CP068264.2:29 128 780 | 87 | SINE (Alu) | SRP54-AS1 | Intron | 2 |
CP068264.2:29 131 238 | 313 | SINE (Alu) | SRP54-AS1 | Intron | 2 |
CP068264.2:32 463 591 | 325 | SINE (Alu) | LOC112268136 | Intron | 2 |
CP068264.2:45 642 552 | 6 031 | LINE (L1) | SETP2 | Promoter | 1 |
CP068264.2:45 642 552 | 6 031 | LINE (L1) | FRMD6 | Intron | 1 |
CP068264.2:53 559 568 | 132 | LINE (L1) | DAAM1 | Intron | 2 |
CP068264.2:55 990 365 | 336 | SINE (Alu) | SNAPC1 | Intron | 2 |
CP068264.2:65 176 814 | 327 | SINE (Alu) | PCNX1 | Intron | 2 |
CP068264.2:65 218 922 | 331 | SINE (Alu) | PCNX1 | Intron | 2 |
CP068264.2:67 743 059 | 1 408 | LTR (ERV1) | ACOT1 | Intron | 1 |
CP068264.2:67 743 506 | 730 | LTR (ERV1) | ACOT1 | Intron | 1 |
CP068264.2:67 764 612 | 311 | SINE (Alu) | HEATR4 | Intron | 2 |
CP068264.2:67 927 366 | 317 | SINE (Alu) | MIDEAS | Intron | 2 |
CP068264.2:87 596 458 | 314 | SINE (Alu) | UNC79 | Intron | 2 |
CP068264.2:94 611 756 | 326 | SINE (Alu) | WDR25 | Intron | 2 |
CP068265.2:5 252 040 | 71 | LINE (L1) | LOC124907012 | Intron | 2 |
CP068265.2:13 715 682 | 196 | SINE (Alu) | FAM230C | Intron | 2 |
CP068265.2:19 029 113 | 304 | SINE (Alu) | ZMYM5 | Intron | 2 |
CP068265.2:20 642 557 | 145 | Retroposon (SVA) | ZDHHC20 | Intron | 2 |
CP068265.2:20 642 723 | 76 | Retroposon (SVA) | ZDHHC20 | Intron | 2 |
CP068265.2:28 214 242 | 66 | LTR (ERV1) | MTUS2 | Intron | 2 |
CP068265.2:28 603 953 | 324 | SINE (Alu) | MTUS2 | Intron | 2 |
CP068265.2:29 823 844 | 327 | SINE (Alu) | HMGB1 | Intron | 2 |
CP068265.2:33 759 344 | 76 | Retroposon (SVA) | LINC02343 | Intron | 1 |
CP068265.2:33 759 648 | 275 | Retroposon (SVA) | LINC02343 | Intron | 1 |
CP068265.2:38 095 120 | 313 | SINE (Alu) | FREM2 | Intron | 2 |
CP068265.2:40 868 719 | 2 724 | Retroposon (SVA) | VWA8 | Intron | 1 |
CP068265.2:41 100 875 | 77 | Retroposon (SVA) | VWA8 | Intron | 2 |
CP068265.2:42 185 736 | 1 644 | Retroposon (SVA) | EPSTI1 | Intron | 2 |
CP068265.2:44 915 232 | 314 | SINE (Alu) | LINC01055 | Intron | 2 |
CP068265.2:45 366 990 | 318 | SINE (Alu) | LCP1 | Intron | 2 |
CP068265.2:45 778 730 | 322 | SINE (Alu) | LRCH1 | Intron | 2 |
CP068265.2:47 438 605 | 306 | SINE (Alu) | LOC105370198 | Intron | 2 |
CP068265.2:57 403 474 | 309 | SINE (Alu) | LINC02338 | Intron | 2 |
CP068265.2:77 302 799 | 315 | SINE (Alu) | OBI1-AS1 | Intron | 2 |
CP068265.2:78 735 172 | 315 | SINE (Alu) | NDFIP2 | Intron | 2 |
CP068265.2:89 698 651 | 101 | LTR (ERV1) | LINC01049 | Intron | 2 |
CP068265.2:91 376 118 | 321 | SINE (Alu) | GPC5 | Intron | 2 |
CP068265.2:92 657 341 | 318 | SINE (Alu) | GPC6 | Intron | 2 |
CP068265.2:98 181 350 | 134 | SINE (Alu) | DOCK9 | Intron | 2 |
CP068265.2:100 191 900 | 100 | LTR (ERV1) | NALCN-AS1 | Intron | 2 |
CP068265.2:106 498 472 | 321 | SINE (Alu) | NALF1 | Intron | 2 |
CP068265.2:107 842 850 | 61 | LINE (L1) | MYO16 | Intron | 2 |
CP068265.2:109 388 985 | 314 | SINE (Alu) | COL4A1 | Intron | 2 |
CP068265.2:109 862 683 | 128 | LTR (ERV1) | NAXD | Intron | 2 |
CP068265.2:110 189 655 | 246 | SINE (Alu) | LOC105370364 | Intron | 2 |
CP068265.2:112 115 809 | 312 | SINE (Alu) | ATP11A | Intron | 2 |
CP068266.2:1 976 788 | 318 | SINE (Alu) | CACNA1C | Intron | 2 |
CP068266.2:3 101 639 | 127 | Retroposon (SVA) | TSPAN9 | Intron | 2 |
CP068266.2:4 668 545 | 309 | SINE (Alu) | NDUFA9 | Intron | 2 |
CP068266.2:4 741 668 | 215 | SINE (Alu) | GALNT8 | Intron | 2 |
CP068266.2:5 668 028 | 308 | SINE (Alu) | ANO2 | Intron | 2 |
CP068266.2:6 807 792 | 255 | SINE (Alu) | CD4 | Intron | 1 |
CP068266.2:7 213 258 | 93 | Retroposon (SVA) | PEX5 | Intron | 2 |
CP068266.2:7 830 662 | 336 | SINE (Alu) | SLC2A14 | Intron | 2 |
CP068266.2:8 456 751 | 319 | SINE (Alu) | CLEC6A | Intron | 2 |
CP068266.2:10 533 754 | 173 | LTR (ERV1) | STYK1 | Intron | 2 |
CP068266.2:10 960 227 | 331 | SINE (Alu) | PRH1-PRR4 | Intron | 1 |
CP068266.2:10 975 580 | 312 | SINE (Alu) | PRH1-PRR4 | Intron | 1 |
CP068266.2:12 283 010 | 97 | Retroposon (SVA) | BORCS5 | Intron | 2 |
CP068266.2:12 325 999 | 310 | SINE (Alu) | BORCS5 | Intron | 1 |
CP068266.2:12 654 312 | 1 782 | LINE (L1) | APOLD1 | Intron | 2 |
CP068266.2:14 829 038 | 325 | SINE (Alu) | ARHGDIB | Promoter | 2 |
CP068266.2:14 829 038 | 325 | SINE (Alu) | ARHGDIB | Intron | 2 |
CP068266.2:21 811 737 | 333 | SINE (Alu) | ABCC9 | Intron | 2 |
CP068266.2:24 707 017 | 309 | SINE (Alu) | BCAT1 | Intron | 2 |
CP068266.2:26 657 326 | 587 | Retroposon (SVA) | ITPR2 | Intron | 2 |
CP068266.2:26 657 354 | 158 | Retroposon (SVA) | ITPR2 | Intron | 1 |
CP068266.2:26 657 772 | 149 | Retroposon (SVA) | ITPR2 | Intron | 2 |
CP068266.2:27 239 765 | 329 | SINE (Alu) | BMAL2 | Intron | 2 |
CP068266.2:27 583 597 | 314 | SINE (Alu) | MRPS35 | Intron | 2 |
CP068266.2:29 543 251 | 313 | SINE (Alu) | TMTC1 | Intron | 2 |
CP068266.2:40 231 437 | 326 | SINE (Alu) | LRRK2 | Intron | 2 |
CP068266.2:41 239 964 | 345 | LINE (L1) | PDZRN4 | Intron | 2 |
CP068266.2:42 186 236 | 97 | Retroposon (SVA) | YAF2 | Intron | 2 |
CP068266.2:44 984 372 | 311 | SINE (Alu) | DBX2 | Intron | 2 |
CP068266.2:51 442 071 | 342 | SINE (Alu) | SLC4A8 | Intron | 2 |
CP068266.2:53 648 538 | 317 | SINE (Alu) | ATP5MC2 | Promoter | 1 |
CP068266.2:62 002 307 | 319 | SINE (Alu) | TAFA2 | Intron | 2 |
CP068266.2:62 465 027 | 321 | SINE (Alu) | MON2 | Intron | 2 |
CP068266.2:64 720 062 | 176 | SINE (Alu) | GNS | Intron | 2 |
CP068266.2:66 492 045 | 313 | SINE (Alu) | GRIP1 | Intron | 1 |
CP068266.2:66 597 279 | 324 | SINE (Alu) | GRIP1 | Intron | 2 |
CP068266.2:77 981 522 | 327 | SINE (Alu) | NAV3 | Intron | 2 |
CP068266.2:80 900 281 | 323 | SINE (Alu) | LIN7A | Intron | 2 |
CP068266.2:94 256 702 | 321 | SINE (Alu) | PLXNC1 | Intron | 2 |
CP068266.2:96 285 798 | 317 | SINE (Alu) | CDK17 | Intron | 2 |
CP068266.2:101 881 504 | 99 | SINE (Alu) | DRAM1 | Intron | 2 |
CP068266.2:105 341 485 | 318 | SINE (Alu) | LOC105369957 | Intron | 2 |
CP068266.2:106 691 957 | 312 | SINE (Alu) | RFX4 | Intron | 2 |
CP068266.2:112 316 213 | 349 | SINE (Alu) | HECTD4 | Intron | 2 |
CP068266.2:113 848 347 | 147 | Retroposon (SVA) | RBM19 | Intron | 1 |
CP068266.2:115 271 606 | 312 | SINE (Alu) | LOC124903082 | Intron | 2 |
CP068266.2:117 736 378 | 3 762 | LINE (L1) | KSR2 | Intron | 2 |
CP068266.2:121 878 118 | 194 | SINE (Alu) | HPD | Intron | 2 |
CP068266.2:121 990 187 | 461 | Retroposon (SVA) | CFAP251 | Intron | 2 |
CP068266.2:122 233 522 | 78 | SINE (Alu) | VPS33A | Intron | 2 |
CP068266.2:122 704 283 | 49 | Retroposon (SVA) | LOC124906985 | Intron | 1 |
CP068266.2:124 855 294 | 309 | SINE (Alu) | SCARB1 | Intron | 2 |
CP068266.2:126 429 324 | 314 | SINE (Alu) | LINC02825 | Intron | 2 |
CP068266.2:126 723 342 | 316 | SINE (Alu) | LINC02824 | Intron | 2 |
CP068266.2:129 608 033 | 326 | SINE (Alu) | TMEM132D | Intron | 2 |
CP068266.2:420 942 | 2 487 | Retroposon (SVA) | CCDC77 | Intron | 2 |
CP068267.2:5 010 997 | 301 | SINE (Alu) | MMP26 | Intron | 2 |
CP068267.2:7 649 824 | 320 | SINE (Alu) | LOC105376535 | Promoter | 2 |
CP068267.2:7 649 824 | 320 | SINE (Alu) | PPFIBP2 | Intron | 2 |
CP068267.2:8 949 899 | 317 | SINE (Alu) | DENND2B | Intron | 2 |
CP068267.2:9 857 725 | 318 | SINE (Alu) | SBF2-AS1 | Intron | 2 |
CP068267.2:14 573 741 | 324 | SINE (Alu) | COPB1 | Intron | 2 |
CP068267.2:17 004 803 | 253 | Retroposon (SVA) | PLEKHA7 | Intron | 2 |
CP068267.2:17 004 834 | 77 | Retroposon (SVA) | PLEKHA7 | Intron | 2 |
CP068267.2:19 481 274 | 324 | SINE (Alu) | NAV2 | Intron | 2 |
CP068267.2:22 361 771 | 123 | LINE (L1) | ANO5 | Intron | 2 |
CP068267.2:24 902 348 | 319 | SINE (Alu) | LUZP2 | Intron | 2 |
CP068267.2:25 682 675 | 345 | SINE (Alu) | LINC02699 | Intron | 2 |
CP068267.2:26 412 603 | 302 | SINE (Alu) | ANO3 | Intron | 2 |
CP068267.2:26 799 043 | 98 | SINE (Alu) | ANO3 | Intron | 2 |
CP068267.2:27 776 457 | 330 | LTR (ERV1) | BDNF-AS | Intron | 2 |
CP068267.2:31 266 980 | 315 | SINE (Alu) | DCDC1 | Intron | 2 |
CP068267.2:33 652 002 | 320 | SINE (Alu) | KIAA1549L | Intron | 2 |
CP068267.2:34 364 862 | 325 | SINE (Alu) | ABTB2 | Intron | 1 |
CP068267.2:34 364 966 | 324 | SINE (Alu) | ABTB2 | Intron | 1 |
CP068267.2:36 680 096 | 6 064 | LINE (L1) | RAG1 | Intron | 2 |
CP068267.2:42 181 175 | 327 | SINE (Alu) | LINC02745 | Intron | 2 |
CP068267.2:47 253 972 | 175 | Retroposon (SVA) | CSTPP1 | Intron | 2 |
CP068267.2:49 811 499 | 302 | SINE (Alu) | GRM5P1 | Intron | 2 |
CP068267.2:60 485 034 | 79 | LINE (L1) | MS4A13 | Intron | 2 |
CP068267.2:63 882 701 | 259 | LINE (L1) | MARK2 | Intron | 2 |
CP068267.2:74 199 847 | 264 | SINE (Alu) | P4HA3 | Intron | 1 |
CP068267.2:75 339 543 | 77 | Retroposon (SVA) | RPS3 | Intron | 2 |
CP068267.2:77 028 418 | 177 | Retroposon (SVA) | CAPN5 | Intron | 2 |
CP068267.2:78 812 830 | 73 | Retroposon (SVA) | TENM4 | Intron | 1 |
CP068267.2:78 812 989 | 76 | Retroposon (SVA) | TENM4 | Intron | 1 |
CP068267.2:79 061 406 | 56 | LTR (ERVL) | TENM4 | Intron | 2 |
CP068267.2:86 426 805 | 320 | SINE (Alu) | ME3 | Intron | 2 |
CP068267.2:89 394 639 | 338 | SINE (Alu) | NOX4 | Intron | 2 |
CP068267.2:89 743 826 | 56 | LINE (L1) | LOC642414 | Intron | 2 |
CP068267.2:93 292 452 | 317 | SINE (Alu) | DEUP1 | Intron | 2 |
CP068267.2:101 050 609 | 317 | SINE (Alu) | PGR | Intron | 2 |
CP068267.2:101 555 768 | 328 | SINE (Alu) | TRPC6 | Intron | 2 |
CP068267.2:102 644 466 | 317 | SINE (Alu) | MMP20-AS1 | Intron | 2 |
CP068267.2:104 919 972 | 320 | SINE (Alu) | CASP4LP | Intron | 2 |
CP068267.2:106 732 181 | 290 | SINE (Alu) | GUCY1A2 | Intron | 2 |
CP068267.2:112 224 222 | 1 288 | LINE (L1) | BCO2 | Intron | 2 |
CP068267.2:114 826 733 | 315 | SINE (Alu) | LOC105369506 | Intron | 2 |
CP068267.2:116 334 364 | 123 | SINE (Alu) | LOC124902834 | Promoter | 2 |
CP068267.2:118 715 549 | 133 | SINE (Alu) | LOC105369519 | Intron | 2 |
CP068267.2:125 617 715 | 2 805 | Retroposon (SVA) | STT3A-AS1 | Intron | 2 |
CP068267.2:127 104 382 | 326 | SINE (Alu) | LOC101929473 | Intron | 2 |
CP068267.2:130 127 234 | 449 | Retroposon (SVA) | APLP2 | Intron | 2 |
CP068267.2:473 330 | 320 | SINE (Alu) | ANO9 | Intron | 2 |
CP068268.2:1 248 623 | 326 | SINE (Alu) | ADARB2 | Intron | 2 |
CP068268.2:3 530 702 | 314 | SINE (Alu) | LOC105376360 | Intron | 2 |
CP068268.2:4 863 989 | 71 | LINE (L1) | AKR1E2 | Intron | 2 |
CP068268.2:9 873 493 | 325 | SINE (Alu) | LINC02663 | Intron | 2 |
CP068268.2:10 462 177 | 323 | SINE (Alu) | CELF2-DT | Intron | 2 |
CP068268.2:10 778 281 | 169 | SINE (Alu) | CELF2 | Intron | 2 |
CP068268.2:14 722 879 | 64 | LINE (L1) | FAM107B | Intron | 2 |
CP068268.2:19 127 412 | 333 | SINE (Alu) | MALRD1 | Intron | 1 |
CP068268.2:19 280 911 | 315 | SINE (Alu) | MALRD1 | Intron | 2 |
CP068268.2:19 517 007 | 295 | SINE (Alu) | MALRD1 | Intron | 2 |
CP068268.2:24 675 533 | 144 | Retroposon (SVA) | ARHGAP21 | Intron | 2 |
CP068268.2:26 033 549 | 330 | SINE (Alu) | MYO3A | Intron | 2 |
CP068268.2:26 090 723 | 316 | SINE (Alu) | MYO3A | Intron | 2 |
CP068268.2:27 326 361 | 448 | Retroposon (SVA) | ODAD2P1 | Intron | 2 |
CP068268.2:29 454 890 | 561 | LINE (L1) | SVIL-AS1 | Intron | 2 |
CP068268.2:30 638 185 | 125 | SINE (Alu) | LYZL2 | Intron | 2 |
CP068268.2:37 665 828 | 301 | SINE (Alu) | LOC102724533 | Intron | 2 |
CP068268.2:38 027 057 | 157 | SINE (Alu) | ZNF25-DT | Intron | 2 |
CP068268.2:43 632 105 | 324 | SINE (Alu) | LOC105378269 | Promoter | 2 |
CP068268.2:47 533 855 | 321 | SINE (Alu) | SHLD2P1 | Intron | 2 |
CP068268.2:49 919 156 | 314 | SINE (Alu) | VSTM4 | Intron | 2 |
CP068268.2:53 574 545 | 70 | SINE (Alu) | LOC105378305 | Intron | 2 |
CP068268.2:55 591 289 | 514 | LINE (L1) | PCDH15 | Intron | 2 |
CP068268.2:55 788 354 | 125 | LINE (L1) | PCDH15 | Intron | 1 |
CP068268.2:62 840 680 | 169 | SINE (Alu) | ARID5B | Intron | 2 |
CP068268.2:67 152 644 | 246 | SINE (Alu) | CTNNA3 | Intron | 2 |
CP068268.2:67 440 301 | 328 | SINE (Alu) | CTNNA3 | Intron | 2 |
CP068268.2:70 106 720 | 314 | SINE (Alu) | HKDC1 | Intron | 2 |
CP068268.2:71 715 465 | 315 | SINE (Alu) | SGPL1 | Intron | 2 |
CP068268.2:72 303 748 | 326 | SINE (Alu) | CDH23 | Intron | 2 |
CP068268.2:76 207 681 | 49 | Retroposon (SVA) | ZNF503-AS1 | Intron | 2 |
CP068268.2:83 352 109 | 485 | Retroposon (SVA) | NRG3 | Intron | 2 |
CP068268.2:85 102 012 | 318 | SINE (Alu) | LRIT2 | Intron | 2 |
CP068268.2:87 084 164 | 304 | SINE (Alu) | GRID1 | Intron | 2 |
CP068268.2:87 790 483 | 323 | SINE (Alu) | BMPR1A | Intron | 2 |
CP068268.2:88 939 111 | 325 | SINE (Alu) | LOC105378414 | Intron | 2 |
CP068268.2:91 338 874 | 313 | SINE (Alu) | LINC02653 | Intron | 2 |
CP068268.2:91 351 314 | 316 | SINE (Alu) | LINC02653 | Intron | 2 |
CP068268.2:95 402 253 | 3 279 | Retroposon (SVA) | TBC1D12 | Intron | 2 |
CP068268.2:96 787 855 | 315 | SINE (Alu) | CC2D2B | Intron | 2 |
CP068268.2:99 145 741 | 328 | SINE (Alu) | LOXL4 | Intron | 1 |
CP068268.2:99 427 122 | 154 | SINE (Alu) | HPSE2 | Intron | 2 |
CP068268.2:100 722 705 | 224 | Retroposon (SVA) | ABCC2 | Intron | 2 |
CP068268.2:100 876 071 | 321 | SINE (Alu) | DNMBP | Intron | 2 |
CP068268.2:102 885 604 | 319 | SINE (Alu) | ARMH3 | Intron | 2 |
CP068268.2:102 921 235 | 141 | Retroposon (SVA) | ARMH3 | Intron | 2 |
CP068268.2:104 015 839 | 229 | Retroposon (SVA) | NT5C2 | Intron | 2 |
CP068268.2:104 225 372 | 312 | SINE (Alu) | PCGF6 | Intron | 2 |
CP068268.2:105 697 311 | 328 | SINE (Alu) | SORCS3 | Intron | 2 |
CP068268.2:116 140 819 | 315 | SINE (Alu) | ATRNL1 | Intron | 2 |
CP068268.2:119 905 022 | 319 | SINE (Alu) | LINC03036 | Intron | 2 |
CP068268.2:121 742 443 | 61 | LTR (ERV1) | WDR11-DT | Intron | 2 |
CP068268.2:131 025 575 | 97 | LINE (L1) | C10orf143 | Intron | 2 |
CP068268.2:131 183 783 | 310 | SINE (Alu) | LOC124900609 | Intron | 2 |
CP068269.2:4 819 340 | 287 | SINE (Alu) | RCL1 | Intron | 2 |
CP068269.2:5 439 269 | 264 | Retroposon (SVA) | PLGRKT | Intron | 1 |
CP068269.2:6 295 538 | 714 | LINE (L1) | LOC107987046 | Intron | 2 |
CP068269.2:6 804 463 | 98 | Retroposon (SVA) | KDM4C | Intron | 2 |
CP068269.2:6 885 377 | 311 | SINE (Alu) | KDM4C | Intron | 2 |
CP068269.2:8 652 319 | 274 | SINE (Alu) | PTPRD | Intron | 2 |
CP068269.2:9 145 491 | 320 | SINE (Alu) | PTPRD | Intron | 2 |
CP068269.2:14 642 210 | 104 | LINE (L1) | ZDHHC21 | Intron | 2 |
CP068269.2:14 887 218 | 320 | SINE (Alu) | FREM1 | Intron | 2 |
CP068269.2:16 401 598 | 326 | SINE (Alu) | LOC124902125 | Intron | 2 |
CP068269.2:18 765 099 | 294 | SINE (Alu) | ADAMTSL1 | Intron | 2 |
CP068269.2:22 072 341 | 76 | SINE (Alu) | CDKN2B-AS1 | Intron | 2 |
CP068269.2:26 487 284 | 119 | SINE (Alu) | LOC105375999 | Intron | 2 |
CP068269.2:34 293 360 | 333 | SINE (Alu) | KIF24 | Intron | 2 |
CP068269.2:34 956 175 | 131 | Retroposon (SVA) | PHF24 | Intron | 2 |
CP068269.2:35 038 160 | 64 | LINE (L1) | LOC105376025 | Intron | 2 |
CP068269.2:76 857 935 | 68 | LINE (L1) | LOC124906851 | Intron | 2 |
CP068269.2:81 331 129 | 316 | SINE (Alu) | TJP2 | Intron | 1 |
CP068269.2:82 329 266 | 6 065 | LINE (L1) | MAMDC2 | Intron | 2 |
CP068269.2:83 123 292 | 132 | SINE (Alu) | TRPM3 | Intron | 2 |
CP068269.2:84 767 523 | 314 | SINE (Alu) | TMC1 | Intron | 2 |
CP068269.2:85 078 955 | 343 | SINE (Alu) | ALDH1A1 | Intron | 2 |
CP068269.2:88 222 509 | 405 | Retroposon (SVA) | PCSK5 | Intron | 2 |
CP068269.2:88 992 783 | 329 | SINE (Alu) | PRUNE2 | Intron | 2 |
CP068269.2:89 451 562 | 321 | SINE (Alu) | VPS13A | Intron | 2 |
CP068269.2:103 462 337 | 731 | LINE (L1) | AUH | Intron | 2 |
CP068269.2:104 686 550 | 320 | SINE (Alu) | CENPP | Intron | 2 |
CP068269.2:104 997 508 | 136 | Retroposon (SVA) | ANKRD19P | Intron | 1 |
CP068269.2:106 136 047 | 252 | SINE (Alu) | LOC124902216 | Intron | 2 |
CP068269.2:106 794 432 | 313 | SINE (Alu) | FBP1 | Intron | 2 |
CP068269.2:112 443 781 | 81 | SINE (Alu) | INVS | Intron | 2 |
CP068269.2:113 619 696 | 310 | SINE (Alu) | LOC105376184 | Intron | 2 |
CP068269.2:115 487 860 | 191 | SINE (Alu) | LINC01492 | Intron | 1 |
CP068269.2:119 632 662 | 60 | SINE (Alu) | LINC01509 | Intron | 2 |
CP068269.2:124 311 520 | 314 | SINE (Alu) | SUSD1 | Intron | 2 |
CP068269.2:124 685 981 | 227 | Retroposon (SVA) | KIAA1958 | Intron | 1 |
CP068269.2:124 686 240 | 177 | Retroposon (SVA) | KIAA1958 | Intron | 1 |
CP068269.2:125 406 178 | 320 | SINE (Alu) | FKBP15 | Intron | 2 |
CP068269.2:141 137 397 | 133 | SINE (Alu) | PHYHD1 | Intron | 2 |
CP068269.2:144 740 730 | 2 976 | LINE (L1) | CFAP77 | Intron | 2 |
CP068269.2:146 110 857 | 226 | Retroposon (SVA) | VAV2 | Intron | 1 |
CP068269.2:150 489 512 | 227 | LINE (L1) | FAM157B | Intron | 1 |
CP068269.2:376 471 | 59 | SINE (Alu) | DOCK8 | Intron | 1 |
CP068269.2:863 345 | 114 | Retroposon (SVA) | DMRT1 | Intron | 2 |
CP068270.2:3 524 025 | 325 | SINE (Alu) | CSMD1 | Intron | 2 |
CP068270.2:5 725 123 | 607 | LINE (L1) | LOC105377795 | Intron | 2 |
CP068270.2:6 485 699 | 318 | SINE (Alu) | AGPAT5 | Intron | 2 |
CP068270.2:10 681 512 | 321 | SINE (Alu) | ERI1 | Intron | 2 |
CP068270.2:12 907 672 | 329 | SINE (Alu) | LOC729732 | Intron | 2 |
CP068270.2:13 365 524 | 334 | SINE (Alu) | DLC1 | Intron | 2 |
CP068270.2:15 957 256 | 322 | SINE (Alu) | TUSC3 | Intron | 1 |
CP068270.2:17 372 585 | 319 | SINE (Alu) | MICU3 | Intron | 2 |
CP068270.2:17 675 688 | 323 | SINE (Alu) | MTMR7 | Intron | 2 |
CP068270.2:19 059 693 | 972 | LTR (ERVK) | PSD3 | Intron | 2 |
CP068270.2:25 737 763 | 49 | SINE (Alu) | CDCA2 | Intron | 2 |
CP068270.2:26 048 555 | 112 | LINE (L1) | LOC107986933 | Intron | 2 |
CP068270.2:28 963 145 | 129 | LINE (L1) | EXTL3 | Promoter | 2 |
CP068270.2:28 963 145 | 129 | LINE (L1) | EXTL3 | Intron | 2 |
CP068270.2:32 796 257 | 196 | LINE (L1) | NRG1 | Intron | 2 |
CP068270.2:34 175 409 | 292 | SINE (Alu) | LOC105379364 | Intron | 2 |
CP068270.2:40 852 584 | 6 101 | LINE (L1) | ZMAT4 | Intron | 2 |
CP068270.2:42 456 695 | 310 | SINE (Alu) | PLAT | Intron | 2 |
CP068270.2:48 487 704 | 321 | SINE (Alu) | LOC107986941 | Intron | 2 |
CP068270.2:54 436 680 | 313 | SINE (Alu) | LYPLA1-TCEA1 | Intron | 2 |
CP068270.2:55 498 084 | 333 | SINE (Alu) | XKR4 | Intron | 2 |
CP068270.2:55 866 232 | 315 | SINE (Alu) | XKR4 | Intron | 2 |
CP068270.2:60 716 533 | 315 | SINE (Alu) | LOC105375864 | Intron | 2 |
CP068270.2:61 037 962 | 321 | SINE (Alu) | RAB2A | Intron | 2 |
CP068270.2:66 658 366 | 175 | Retroposon (SVA) | LOC102724687 | Intron | 1 |
CP068270.2:73 800 713 | 326 | SINE (Alu) | LOC105375899 | Promoter | 2 |
CP068270.2:74 052 032 | 170 | SINE (Alu) | STAU2 | Intron | 2 |
CP068270.2:74 150 241 | 327 | SINE (Alu) | STAU2 | Intron | 2 |
CP068270.2:76 854 880 | 1 039 | LINE (L1) | LINC01111 | Intron | 2 |
CP068270.2:94 275 050 | 314 | SINE (Alu) | LINC02906 | Intron | 2 |
CP068270.2:96 503 803 | 231 | SINE (Alu) | CFAP418-AS1 | Intron | 2 |
CP068270.2:96 580 482 | 315 | SINE (Alu) | CFAP418-AS1 | Intron | 1 |
CP068270.2:98 461 839 | 321 | SINE (Alu) | LOC101927066 | Intron | 2 |
CP068270.2:99 578 329 | 325 | SINE (Alu) | STK3 | Intron | 2 |
CP068270.2:106 015 693 | 335 | SINE (Alu) | LOC105375694 | Intron | 2 |
CP068270.2:106 786 176 | 330 | SINE (Alu) | ZFPM2 | Intron | 2 |
CP068270.2:107 627 313 | 323 | SINE (Alu) | OXR1 | Intron | 2 |
CP068270.2:107 844 447 | 325 | SINE (Alu) | OXR1 | Intron | 2 |
CP068270.2:110 465 615 | 302 | SINE (Alu) | ENY2 | Intron | 2 |
CP068270.2:116 603 471 | 327 | SINE (Alu) | TRPS1 | Intron | 2 |
CP068270.2:119 563 257 | 309 | SINE (Alu) | SAMD12 | Intron | 2 |
CP068270.2:121 797 875 | 319 | SINE (Alu) | SNTB1 | Intron | 1 |
CP068270.2:122 849 197 | 322 | SINE (Alu) | LOC124906789 | Intron | 2 |
CP068270.2:123 646 343 | 311 | SINE (Alu) | SMILR | Intron | 2 |
CP068270.2:126 458 371 | 317 | SINE (Alu) | NSMCE2 | Intron | 2 |
CP068270.2:132 282 389 | 311 | SINE (Alu) | LOC105375760 | Intron | 2 |
CP068270.2:133 053 370 | 323 | SINE (Alu) | EFR3A | Intron | 2 |
CP068270.2:137 820 678 | 329 | SINE (Alu) | LINC02055 | Intron | 2 |
CP068270.2:138 964 924 | 320 | SINE (Alu) | LOC401478 | Intron | 2 |
CP068271.2:2 382 179 | 77 | Retroposon (SVA) | SNX8 | Intron | 2 |
CP068271.2:2 674 652 | 107 | SINE (Alu) | IQCE | Intron | 2 |
CP068271.2:6 790 042 | 96 | Retroposon (SVA) | LOC124901583 | Intron | 2 |
CP068271.2:8 616 432 | 317 | SINE (Alu) | NXPH1 | Intron | 2 |
CP068271.2:14 540 334 | 319 | SINE (Alu) | DGKB | Intron | 2 |
CP068271.2:18 412 782 | 279 | SINE (Alu) | HDAC9 | Intron | 2 |
CP068271.2:20 804 219 | 49 | Retroposon (SVA) | ABCB5 | Intron | 1 |
CP068271.2:22 949 794 | 311 | SINE (Alu) | TOMM7 | Intron | 2 |
CP068271.2:26 303 990 | 120 | LINE (L1) | NFE2L3 | Intron | 2 |
CP068271.2:37 578 432 | 322 | SINE (Alu) | ELMO1 | Intron | 2 |
CP068271.2:38 626 104 | 315 | SINE (Alu) | AMPH | Intron | 2 |
CP068271.2:38 630 323 | 336 | SINE (Alu) | AMPH | Intron | 2 |
CP068271.2:39 722 369 | 324 | SINE (Alu) | YAE1-DT | Intron | 2 |
CP068271.2:42 668 469 | 318 | SINE (Alu) | LOC105375250 | Promoter | 2 |
CP068271.2:43 532 806 | 253 | SINE (Alu) | HECW1 | Intron | 2 |
CP068271.2:45 911 341 | 325 | SINE (Alu) | SEPTIN7P2 | Intron | 2 |
CP068271.2:48 018 075 | 321 | SINE (Alu) | PKD1L1 | Intron | 2 |
CP068271.2:66 601 866 | 304 | SINE (Alu) | ZNF92 | Intron | 1 |
CP068271.2:75 759 083 | 179 | SINE (Alu) | GTF2IRD1 | Intron | 2 |
CP068271.2:77 895 803 | 300 | SINE (Alu) | LINC03009 | Intron | 2 |
CP068271.2:79 582 546 | 322 | SINE (Alu) | MAGI2 | Intron | 2 |
CP068271.2:83 623 827 | 326 | SINE (Alu) | CACNA2D1 | Intron | 2 |
CP068271.2:84 052 406 | 316 | SINE (Alu) | PCLO | Intron | 2 |
CP068271.2:85 626 331 | 314 | SINE (Alu) | SEMA3A | Intron | 2 |
CP068271.2:86 363 451 | 307 | SINE (Alu) | SEMA3D | Intron | 2 |
CP068271.2:90 466 172 | 343 | SINE (Alu) | ZNF804B | Intron | 2 |
CP068271.2:91 220 124 | 318 | SINE (Alu) | STEAP2-AS1 | Intron | 2 |
CP068271.2:91 992 917 | 206 | Retroposon (SVA) | CDK14 | Intron | 2 |
CP068271.2:93 363 499 | 315 | SINE (Alu) | CYP51A1 | Intron | 2 |
CP068271.2:96 385 565 | 328 | SINE (Alu) | PPP1R9A | Intron | 1 |
CP068271.2:96 708 060 | 292 | SINE (Alu) | LOC107986823 | Intron | 2 |
CP068271.2:97 674 156 | 314 | SINE (Alu) | LOC105375410 | Intron | 2 |
CP068271.2:98 667 753 | 315 | SINE (Alu) | LOC105375416 | Intron | 2 |
CP068271.2:102 681 693 | 2 781 | Retroposon (SVA) | COL26A1 | Intron | 2 |
CP068271.2:103 867 427 | 84 | SINE (Alu) | POLR2J3-UPK3BL2 | Intron | 2 |
CP068271.2:104 162 973 | 334 | SINE (Alu) | FAM185A | Intron | 2 |
CP068271.2:106 264 512 | 103 | SINE (Alu) | LOC101927902 | Intron | 2 |
CP068271.2:106 569 810 | 322 | SINE (Alu) | SRPK2 | Intron | 2 |
CP068271.2:109 361 786 | 123 | SINE (Alu) | LAMB4 | Intron | 1 |
CP068271.2:112 163 030 | 96 | LINE (L1) | IMMP2L | Intron | 2 |
CP068271.2:113 557 064 | 310 | SINE (Alu) | ZNF277 | Intron | 2 |
CP068271.2:115 628 403 | 310 | SINE (Alu) | FOXP2 | Intron | 2 |
CP068271.2:118 517 612 | 311 | SINE (Alu) | ST7 | Intron | 2 |
CP068271.2:119 758 768 | 316 | SINE (Alu) | LOC105375471 | Intron | 2 |
CP068271.2:126 270 363 | 316 | SINE (Alu) | POT1-AS1 | Intron | 2 |
CP068271.2:126 339 967 | 165 | LTR (ERVL) | POT1-AS1 | Intron | 2 |
CP068271.2:130 739 691 | 310 | SINE (Alu) | AHCYL2 | Intron | 2 |
CP068271.2:132 092 197 | 152 | SINE (Alu) | LOC105375508 | Intron | 2 |
CP068271.2:132 267 964 | 340 | SINE (Alu) | LINC-PINT | Intron | 2 |
CP068271.2:132 541 792 | 144 | SINE (Alu) | MKLN1 | Intron | 2 |
CP068271.2:134 744 375 | 326 | SINE (Alu) | EXOC4 | Intron | 2 |
CP068271.2:136 047 540 | 325 | SINE (Alu) | LOC124901750 | Intron | 2 |
CP068271.2:136 812 007 | 334 | SINE (Alu) | CNOT4 | Intron | 2 |
CP068271.2:138 459 440 | 318 | SINE (Alu) | LOC349160 | Intron | 2 |
CP068271.2:140 191 659 | 282 | SINE (Alu) | KIAA1549 | Intron | 2 |
CP068271.2:141 676 137 | 176 | Retroposon (SVA) | SLC37A3 | Intron | 1 |
CP068271.2:141 676 145 | 213 | Retroposon (SVA) | SLC37A3 | Intron | 1 |
CP068271.2:149 591 887 | 134 | SINE (Alu) | CNTNAP2 | Intron | 2 |
CP068271.2:149 923 445 | 134 | SINE (Alu) | CUL1 | Intron | 2 |
CP068271.2:150 303 197 | 308 | SINE (Alu) | ZNF425 | Intron | 2 |
CP068271.2:151 854 517 | 90 | SINE (Alu) | LOC124901774 | Intron | 2 |
CP068271.2:152 533 889 | 140 | SINE (Alu) | NUB1 | Intron | 2 |
CP068271.2:155 766 181 | 330 | SINE (Alu) | DPP6 | Intron | 2 |
CP068271.2:158 746 775 | 340 | SINE (Alu) | PTPRN2 | Intron | 2 |
CP068272.2:5 217 730 | 320 | SINE (Alu) | FARS2 | Intron | 2 |
CP068272.2:5 357 830 | 123 | SINE (Alu) | FARS2 | Intron | 2 |
CP068272.2:6 146 362 | 258 | SINE (Alu) | F13A1 | Intron | 2 |
CP068272.2:7 310 938 | 81 | LTR (ERV1) | LOC102724234 | Intron | 2 |
CP068272.2:10 902 109 | 134 | SINE (Alu) | ELOVL2 | Intron | 2 |
CP068272.2:13 332 877 | 318 | SINE (Alu) | GFOD1 | Intron | 2 |
CP068272.2:13 394 506 | 330 | SINE (Alu) | RPS4XP7 | Promoter | 2 |
CP068272.2:17 522 845 | 331 | SINE (Alu) | NUP153 | Intron | 2 |
CP068272.2:17 747 146 | 316 | SINE (Alu) | KIF13A | Intron | 2 |
CP068272.2:19 027 502 | 322 | SINE (Alu) | LOC101928519 | Intron | 2 |
CP068272.2:28 879 239 | 101 | SINE (Alu) | ZNF311 | Intron | 2 |
CP068272.2:29 270 909 | 139 | SINE (Alu) | OR12D2 | Intron | 2 |
CP068272.2:29 722 655 | 318 | SINE (Alu) | LOC105375010 | Intron | 2 |
CP068272.2:30 680 514 | 159 | LTR (ERV1) | LINC00243 | Intron | 2 |
CP068272.2:31 324 347 | 313 | SINE (Alu) | HCG26 | Promoter | 2 |
CP068272.2:31 351 695 | 173 | SINE (Alu) | MICB | Intron | 2 |
CP068272.2:32 199 253 | 321 | SINE (Alu) | TSBP1-AS1 | Intron | 2 |
CP068272.2:32 343 356 | 294 | SINE (Alu) | LOC124905397 | Promoter | 2 |
CP068272.2:32 354 825 | 315 | SINE (Alu) | HLA-DRB3 | Intron | 2 |
CP068272.2:32 410 001 | 319 | SINE (Alu) | HLA-DRB1 | Intron | 1 |
CP068272.2:32 412 809 | 307 | SINE (Alu) | HLA-DRB1 | Intron | 2 |
CP068272.2:32 421 491 | 285 | SINE (Alu) | HLA-DRB1 | Intron | 1 |
CP068272.2:32 423 285 | 1 114 | LTR (ERVK) | HLA-DRB1 | Promoter | 2 |
CP068272.2:32 487 036 | 319 | SINE (Alu) | HLA-DQB1 | Intron | 2 |
CP068272.2:36 183 679 | 101 | LTR (ERV1) | ETV7 | Intron | 1 |
CP068272.2:38 355 201 | 137 | LTR (ERVK) | BTBD9 | Intron | 2 |
CP068272.2:38 746 508 | 50 | LTR (ERV1) | DNAH8 | Intron | 2 |
CP068272.2:42 430 460 | 160 | SINE (Alu) | UBR2 | Intron | 2 |
CP068272.2:42 896 868 | 322 | SINE (Alu) | KLC4 | Intron | 2 |
CP068272.2:43 181 094 | 66 | LINE (L1) | ZNF318 | Intron | 2 |
CP068272.2:43 757 249 | 314 | SINE (Alu) | LINC01512 | Intron | 2 |
CP068272.2:43 979 893 | 978 | Retroposon (SVA) | TMEM63B | Intron | 2 |
CP068272.2:45 127 498 | 324 | SINE (Alu) | SUPT3H | Intron | 2 |
CP068272.2:45 835 182 | 327 | SINE (Alu) | CLIC5 | Intron | 2 |
CP068272.2:51 717 831 | 6 018 | LINE (L1) | PKHD1 | Intron | 2 |
CP068272.2:51 903 534 | 317 | SINE (Alu) | PKHD1 | Intron | 1 |
CP068272.2:53 584 806 | 282 | SINE (Alu) | LOC124901334 | Intron | 2 |
CP068272.2:53 623 893 | 313 | SINE (Alu) | LOC124901333 | Intron | 2 |
CP068272.2:54 692 012 | 140 | SINE (Alu) | FAM83B | Intron | 2 |
CP068272.2:56 735 170 | 2 593 | Retroposon (SVA) | DST | Intron | 2 |
CP068272.2:62 724 632 | 133 | SINE (Alu) | KHDRBS2 | Intron | 2 |
CP068272.2:66 430 398 | 306 | SINE (Alu) | EYS | Intron | 2 |
CP068272.2:66 607 855 | 308 | SINE (Alu) | EYS | Intron | 2 |
CP068272.2:66 716 755 | 327 | SINE (Alu) | EYS | Intron | 1 |
CP068272.2:70 011 053 | 326 | SINE (Alu) | ADGRB3 | Intron | 2 |
CP068272.2:70 300 658 | 75 | Retroposon (SVA) | ADGRB3 | Intron | 2 |
CP068272.2:72 510 962 | 313 | SINE (Alu) | LOC124901339 | Intron | 2 |
CP068272.2:73 224 839 | 301 | SINE (Alu) | RIMS1 | Intron | 2 |
CP068272.2:75 805 446 | 325 | SINE (Alu) | LOC101928516 | Intron | 2 |
CP068272.2:76 483 619 | 49 | SINE (Alu) | FILIP1 | Intron | 2 |
CP068272.2:78 884 410 | 321 | SINE (Alu) | MEI4 | Intron | 2 |
CP068272.2:79 310 809 | 290 | SINE (Alu) | LOC105377865 | Intron | 2 |
CP068272.2:84 185 928 | 313 | SINE (Alu) | UBE3D | Intron | 2 |
CP068272.2:91 454 963 | 6 067 | LINE (L1) | BACH2 | Intron | 2 |
CP068272.2:97 577 072 | 329 | LTR (ERV1) | UFL1-AS1 | Intron | 1 |
CP068272.2:97 741 692 | 319 | SINE (Alu) | FHL5 | Intron | 2 |
CP068272.2:105 950 363 | 309 | SINE (Alu) | HACE1 | Intron | 2 |
CP068272.2:109 130 963 | 270 | Retroposon (SVA) | SEC63 | Intron | 1 |
CP068272.2:111 652 259 | 308 | SINE (Alu) | SLC22A16 | Intron | 2 |
CP068272.2:117 169 354 | 289 | SINE (Alu) | FRK | Intron | 2 |
CP068272.2:117 706 715 | 316 | SINE (Alu) | TRAPPC3L | Intron | 2 |
CP068272.2:119 490 091 | 295 | SINE (Alu) | SLC35F1 | Intron | 2 |
CP068272.2:123 847 137 | 320 | SINE (Alu) | PKIB | Intron | 2 |
CP068272.2:131 488 431 | 283 | SINE (Alu) | SAMD3 | Intron | 2 |
CP068272.2:132 890 430 | 328 | SINE (Alu) | ENPP3 | Intron | 2 |
CP068272.2:134 599 477 | 177 | SINE (Alu) | EYA4 | Intron | 2 |
CP068272.2:140 162 116 | 320 | SINE (Alu) | REPS1 | Intron | 1 |
CP068272.2:140 470 041 | 315 | SINE (Alu) | LOC102723690 | Intron | 2 |
CP068272.2:146 891 518 | 343 | SINE (Alu) | EPM2A | Intron | 2 |
CP068272.2:155 567 177 | 275 | SINE (Alu) | LOC105378067 | Promoter | 2 |
CP068272.2:155 567 177 | 275 | SINE (Alu) | LOC105378067 | Intron | 2 |
CP068272.2:157 199 315 | 307 | SINE (Alu) | LOC101928923 | Intron | 2 |
CP068272.2:158 278 908 | 327 | SINE (Alu) | ARID1B | Intron | 2 |
CP068272.2:159 373 455 | 1 102 | Retroposon (SVA) | SERAC1 | Intron | 2 |
CP068272.2:159 484 439 | 527 | Retroposon (SVA) | TULP4 | Intron | 1 |
CP068272.2:159 484 457 | 126 | Retroposon (SVA) | TULP4 | Intron | 1 |
CP068272.2:159 484 658 | 400 | Retroposon (SVA) | TULP4 | Intron | 1 |
CP068272.2:159 484 900 | 342 | Retroposon (SVA) | TULP4 | Intron | 1 |
CP068272.2:159 485 235 | 347 | Retroposon (SVA) | TULP4 | Intron | 2 |
CP068272.2:163 955 920 | 360 | SINE (Alu) | PRKN | Intron | 2 |
CP068272.2:167 234 415 | 324 | SINE (Alu) | PDE10A | Intron | 1 |
CP068272.2:170 025 258 | 352 | LTR (ERV1) | LOC105378143 | Intron | 2 |
CP068273.2:1 857 117 | 311 | SINE (Alu) | LOC124901165 | Intron | 2 |
CP068273.2:1 883 626 | 3 184 | LINE (L1) | LOC105374618 | Intron | 2 |
CP068273.2:13 792 771 | 312 | SINE (Alu) | DNAH5 | Intron | 2 |
CP068273.2:14 625 306 | 222 | SINE (Alu) | OTULIN | Intron | 2 |
CP068273.2:16 655 697 | 310 | SINE (Alu) | MYO10 | Intron | 2 |
CP068273.2:20 465 006 | 163 | SINE (Alu) | CDH18 | Intron | 2 |
CP068273.2:25 338 978 | 294 | SINE (Alu) | LINC02211 | Intron | 2 |
CP068273.2:32 854 713 | 329 | SINE (Alu) | NPR3 | Intron | 2 |
CP068273.2:37 665 203 | 153 | Retroposon (SVA) | WDR70 | Intron | 2 |
CP068273.2:37 812 856 | 625 | Retroposon (SVA) | WDR70 | Intron | 2 |
CP068273.2:37 937 889 | 282 | SINE (Alu) | WDR70 | Intron | 2 |
CP068273.2:39 542 380 | 332 | SINE (Alu) | C9 | Intron | 2 |
CP068273.2:42 919 106 | 337 | SINE (Alu) | GHR | Intron | 2 |
CP068273.2:43 769 164 | 68 | LTR (ERV1) | LOC124900190 | Intron | 2 |
CP068273.2:43 795 329 | 321 | SINE (Alu) | PAIP1 | Intron | 2 |
CP068273.2:63 380 904 | 323 | SINE (Alu) | IPO11 | Intron | 2 |
CP068273.2:66 799 023 | 343 | Retroposon (SVA) | ERBIN | Intron | 2 |
CP068273.2:69 790 093 | 650 | LINE (L1) | LOC107984116 | Intron | 2 |
CP068273.2:70 611 005 | 329 | SINE (Alu) | LOC124906514 | Intron | 2 |
CP068273.2:70 867 341 | 328 | SINE (Alu) | GUSBP15 | Intron | 1 |
CP068273.2:71 140 624 | 328 | SINE (Alu) | GUSBP15 | Intron | 1 |
CP068273.2:76 653 910 | 176 | Retroposon (SVA) | SV2C | Intron | 2 |
CP068273.2:77 524 535 | 146 | Retroposon (SVA) | AGGF1 | Intron | 1 |
CP068273.2:78 235 160 | 335 | SINE (Alu) | TBCA | Intron | 1 |
CP068273.2:78 248 785 | 311 | SINE (Alu) | TBCA | Intron | 1 |
CP068273.2:78 760 227 | 284 | SINE (Alu) | AP3B1 | Intron | 2 |
CP068273.2:81 228 496 | 308 | SINE (Alu) | MSH3 | Intron | 2 |
CP068273.2:83 675 995 | 306 | SINE (Alu) | XRCC4 | Intron | 2 |
CP068273.2:88 585 051 | 329 | SINE (Alu) | LOC105379070 | Intron | 2 |
CP068273.2:91 188 443 | 154 | SINE (Alu) | ADGRV1 | Intron | 2 |
CP068273.2:109 845 795 | 97 | Retroposon (SVA) | PJA2 | Intron | 2 |
CP068273.2:111 260 797 | 171 | SINE (Alu) | SLC25A46 | Intron | 2 |
CP068273.2:111 960 940 | 186 | SINE (Alu) | CAMK4 | Intron | 2 |
CP068273.2:115 269 236 | 313 | SINE (Alu) | LOC101927078 | Intron | 2 |
CP068273.2:116 675 590 | 310 | SINE (Alu) | COMMD10 | Intron | 1 |
CP068273.2:118 013 084 | 306 | SINE (Alu) | LINC00992 | Intron | 2 |
CP068273.2:123 455 525 | 320 | SINE (Alu) | SNX24 | Intron | 2 |
CP068273.2:123 753 516 | 522 | LINE (L1) | TUBB8P11 | Intron | 2 |
CP068273.2:138 214 048 | 1 321 | Retroposon (SVA) | KLHL3 | Intron | 2 |
CP068273.2:138 669 937 | 65 | LTR (ERV1) | BRD8 | Intron | 2 |
CP068273.2:139 924 858 | 293 | SINE (Alu) | SPATA24 | Intron | 2 |
CP068273.2:143 506 739 | 304 | SINE (Alu) | ARHGAP26 | Intron | 2 |
CP068273.2:147 526 118 | 318 | SINE (Alu) | PPP2R2B | Intron | 2 |
CP068273.2:150 072 540 | 318 | SINE (Alu) | CSNK1A1 | Intron | 2 |
CP068273.2:155 492 380 | 2 717 | Retroposon (SVA) | MRPL22 | Intron | 2 |
CP068273.2:156 439 730 | 2 491 | LINE (L1) | SGCD | Intron | 2 |
CP068273.2:163 927 719 | 172 | LINE (L1) | LOC105377700 | Intron | 2 |
CP068273.2:165 474 497 | 309 | SINE (Alu) | LINC03000 | Intron | 2 |
CP068273.2:168 395 198 | 899 | Retroposon (SVA) | TENM2 | Intron | 2 |
CP068273.2:180 746 045 | 173 | SINE (Alu) | RASGEF1C | Intron | 2 |
CP068274.2:1 306 582 | 316 | SINE (Alu) | MAEA | Intron | 2 |
CP068274.2:1 318 271 | 132 | SINE (Alu) | MAEA | Intron | 2 |
CP068274.2:4 626 805 | 51 | SINE (MIR) | STX18-AS1 | Intron | 2 |
CP068274.2:6 949 610 | 159 | Retroposon (SVA) | TBC1D14 | Intron | 1 |
CP068274.2:6 949 676 | 159 | Retroposon (SVA) | TBC1D14 | Intron | 1 |
CP068274.2:8 373 198 | 159 | SINE (Alu) | ACOX3 | Intron | 2 |
CP068274.2:10 607 028 | 6 059 | LINE (L1) | CLNK | Intron | 2 |
CP068274.2:10 696 742 | 220 | SINE (Alu) | CLNK | Intron | 2 |
CP068274.2:14 827 301 | 5 463 | LINE (L1) | LINC00504 | Intron | 2 |
CP068274.2:14 937 063 | 114 | LTR (ERVL) | CPEB2-DT | Intron | 2 |
CP068274.2:15 773 375 | 497 | Retroposon (SVA) | CD38 | Intron | 2 |
CP068274.2:16 374 994 | 71 | Retroposon (SVA) | LOC105374505 | Intron | 2 |
CP068274.2:16 374 994 | 121 | Retroposon (SVA) | LOC105374505 | Intron | 1 |
CP068274.2:19 202 987 | 313 | SINE (Alu) | LINC02438 | Intron | 2 |
CP068274.2:20 388 569 | 987 | LINE (L1) | SLIT2 | Intron | 2 |
CP068274.2:25 221 331 | 140 | LTR (ERV1) | PI4K2B | Intron | 2 |
CP068274.2:25 809 920 | 145 | SINE (Alu) | SEL1L3 | Intron | 2 |
CP068274.2:26 470 139 | 281 | SINE (Alu) | CCKAR | Intron | 1 |
CP068274.2:28 304 766 | 311 | SINE (Alu) | LOC105374557 | Intron | 2 |
CP068274.2:30 879 423 | 320 | SINE (Alu) | PCDH7 | Intron | 2 |
CP068274.2:36 292 568 | 313 | SINE (Alu) | DTHD1 | Intron | 2 |
CP068274.2:37 478 028 | 86 | Retroposon (SVA) | C4orf19 | Intron | 2 |
CP068274.2:39 675 502 | 162 | SINE (Alu) | UBE2K | Intron | 2 |
CP068274.2:40 853 100 | 332 | SINE (Alu) | APBB2 | Intron | 2 |
CP068274.2:41 203 745 | 338 | SINE (Alu) | UCHL1-DT | Intron | 2 |
CP068274.2:41 892 608 | 309 | SINE (Alu) | LOC105374426 | Intron | 2 |
CP068274.2:41 995 740 | 182 | SINE (Alu) | SLC30A9 | Intron | 2 |
CP068274.2:47 509 431 | 333 | SINE (Alu) | ATP10D | Intron | 2 |
CP068274.2:58 993 922 | 320 | SINE (Alu) | CLOCK | Intron | 2 |
CP068274.2:59 545 991 | 194 | SINE (Alu) | CRACD | Intron | 2 |
CP068274.2:67 788 030 | 290 | SINE (Alu) | TECRL | Intron | 2 |
CP068274.2:72 534 968 | 322 | SINE (Alu) | UGT2B7 | Intron | 2 |
CP068274.2:72 690 165 | 265 | LINE (L1) | TUBB8P11 | Intron | 2 |
CP068274.2:73 581 960 | 186 | LINE (L1) | CSN3 | Promoter | 2 |
CP068274.2:73 581 960 | 186 | LINE (L1) | CSN3 | Intron | 2 |
CP068274.2:81 689 174 | 6 068 | LINE (L1) | FRAS1 | Intron | 2 |
CP068274.2:82 894 257 | 83 | LTR (ERV1) | LINC00989 | Intron | 2 |
CP068274.2:83 183 785 | 685 | LINE (L1) | PCAT4 | Intron | 2 |
CP068274.2:83 303 274 | 6 057 | LINE (L1) | ANTXR2 | Intron | 2 |
CP068274.2:85 588 188 | 303 | SINE (Alu) | LOC105377308 | Intron | 2 |
CP068274.2:85 803 947 | 316 | SINE (Alu) | LOC105377310 | Intron | 2 |
CP068274.2:88 878 813 | 316 | SINE (Alu) | ARHGAP24 | Intron | 2 |
CP068274.2:88 913 506 | 72 | LINE (L1) | ARHGAP24 | Intron | 2 |
CP068274.2:90 440 357 | 329 | SINE (Alu) | AFF1 | Intron | 2 |
CP068274.2:92 373 426 | 216 | SINE (Alu) | FAM13A | Intron | 1 |
CP068274.2:93 980 210 | 61 | LTR (ERVL) | CCSER1 | Intron | 2 |
CP068274.2:94 335 928 | 1 735 | LINE (L1) | CCSER1 | Intron | 1 |
CP068274.2:95 798 087 | 316 | SINE (Alu) | GRID2 | Intron | 2 |
CP068274.2:96 959 694 | 6 047 | LINE (L1) | GRID2 | Intron | 2 |
CP068274.2:98 264 406 | 317 | SINE (Alu) | BMPR1B | Intron | 2 |
CP068274.2:99 966 117 | 316 | SINE (Alu) | LINC02267 | Intron | 2 |
CP068274.2:106 266 328 | 2 504 | LINE (L1) | SLC9B1 | Intron | 2 |
CP068274.2:107 986 922 | 312 | SINE (Alu) | CXXC4-AS1 | Intron | 2 |
CP068274.2:112 879 734 | 320 | SINE (Alu) | MCUB | Intron | 2 |
CP068274.2:117 763 832 | 318 | SINE (Alu) | LOC105377379 | Intron | 2 |
CP068274.2:120 081 692 | 901 | LINE (L1) | LOC107986306 | Intron | 1 |
CP068274.2:124 831 135 | 179 | SINE (Alu) | LOC107986310 | Intron | 2 |
CP068274.2:126 179 534 | 277 | SINE (Alu) | FGF2 | Intron | 2 |
CP068274.2:127 013 551 | 129 | LINE (L1) | LINC01091 | Intron | 2 |
CP068274.2:130 985 011 | 310 | SINE (Alu) | INTU | Intron | 2 |
CP068274.2:131 590 178 | 321 | SINE (Alu) | PGRMC2 | Intron | 2 |
CP068274.2:143 337 477 | 149 | SINE (Alu) | MAML3 | Intron | 2 |
CP068274.2:145 654 380 | 312 | SINE (Alu) | INPP4B | Intron | 2 |
CP068274.2:146 289 | 3 374 | Retroposon (SVA) | ZNF718 | Intron | 2 |
CP068274.2:147 791 504 | 326 | SINE (Alu) | LOC105377462 | Intron | 2 |
CP068274.2:152 561 796 | 338 | SINE (Alu) | LINC02355 | Intron | 2 |
CP068274.2:153 595 372 | 142 | LINE (L1) | LRBA | Intron | 2 |
CP068274.2:153 696 604 | 324 | SINE (Alu) | LRBA | Intron | 2 |
CP068274.2:153 984 112 | 97 | Retroposon (SVA) | LRBA | Intron | 2 |
CP068274.2:154 538 658 | 126 | Retroposon (SVA) | SH3D19 | Intron | 1 |
CP068274.2:157 304 320 | 324 | SINE (Alu) | LOC101927947 | Intron | 2 |
CP068274.2:158 831 227 | 103 | SINE (Alu) | LOC105377505 | Intron | 2 |
CP068274.2:163 055 731 | 321 | SINE (Alu) | LOC107986324 | Intron | 2 |
CP068274.2:164 785 720 | 310 | SINE (Alu) | FSTL5 | Intron | 1 |
CP068274.2:166 928 648 | 313 | SINE (Alu) | MARCHF1 | Intron | 2 |
CP068274.2:167 229 299 | 309 | SINE (Alu) | MARCHF1 | Intron | 2 |
CP068274.2:168 130 293 | 57 | SINE (Alu) | SMIM31 | Intron | 2 |
CP068274.2:169 429 777 | 591 | LINE (L1) | TLL1 | Intron | 2 |
CP068274.2:173 273 624 | 299 | SINE (Alu) | LOC105377530 | Intron | 1 |
CP068274.2:176 567 724 | 317 | SINE (Alu) | GALNT7 | Intron | 2 |
CP068274.2:177 630 266 | 311 | SINE (Alu) | CEP44 | Intron | 2 |
CP068274.2:177 952 805 | 325 | SINE (Alu) | LOC105377549 | Promoter | 2 |
CP068274.2:177 952 805 | 325 | SINE (Alu) | LOC105377549 | Intron | 2 |
CP068274.2:180 879 949 | 64 | LTR (ERV1) | AGA-DT | Intron | 1 |
CP068274.2:183 743 146 | 133 | SINE (Alu) | LOC105377567 | Intron | 2 |
CP068274.2:183 970 626 | 312 | SINE (Alu) | LOC105377567 | Intron | 2 |
CP068274.2:184 287 169 | 205 | Retroposon (SVA) | LOC105377567 | Intron | 2 |
CP068274.2:188 577 957 | 311 | SINE (Alu) | SNX25 | Intron | 2 |
CP068274.2:188 770 999 | 325 | SINE (Alu) | CFAP96 | Intron | 2 |
CP068274.2:188 804 270 | 286 | SINE (Alu) | CCDC110 | Intron | 2 |
CP068275.2:1 238 682 | 63 | LTR (ERV1) | CNTN6 | Intron | 2 |
CP068275.2:2 123 290 | 336 | SINE (Alu) | CNTN4 | Intron | 2 |
CP068275.2:2 584 962 | 313 | SINE (Alu) | CNTN4 | Intron | 2 |
CP068275.2:5 436 105 | 317 | SINE (Alu) | LOC105376936 | Promoter | 2 |
CP068275.2:7 119 409 | 64 | SINE (Alu) | GRM7 | Intron | 2 |
CP068275.2:7 563 823 | 309 | SINE (Alu) | GRM7 | Intron | 2 |
CP068275.2:11 157 429 | 314 | SINE (Alu) | HRH1 | Intron | 2 |
CP068275.2:11 482 565 | 147 | Retroposon (SVA) | ATG7 | Intron | 2 |
CP068275.2:12 308 635 | 309 | SINE (Alu) | PPARG | Intron | 2 |
CP068275.2:19 974 106 | 100 | SINE (Alu) | RAB5A | Intron | 1 |
CP068275.2:24 782 411 | 319 | SINE (Alu) | LOC107986070 | Intron | 1 |
CP068275.2:25 351 239 | 317 | SINE (Alu) | RARB | Intron | 2 |
CP068275.2:25 630 260 | 315 | SINE (Alu) | TOP2B | Intron | 2 |
CP068275.2:28 128 299 | 323 | SINE (Alu) | LOC105377008 | Intron | 2 |
CP068275.2:29 581 534 | 319 | SINE (Alu) | RBMS3 | Intron | 2 |
CP068275.2:32 005 643 | 94 | LTR (ERV1) | OSBPL10 | Intron | 1 |
CP068275.2:32 394 273 | 253 | SINE (Alu) | CMTM7 | Intron | 2 |
CP068275.2:35 011 146 | 322 | SINE (Alu) | LOC101928135 | Intron | 2 |
CP068275.2:36 454 965 | 138 | LTR (ERV1) | STAC | Intron | 2 |
CP068275.2:38 085 678 | 298 | Retroposon (SVA) | DLEC1 | Intron | 2 |
CP068275.2:38 119 250 | 134 | SINE (Alu) | DLEC1 | Intron | 2 |
CP068275.2:45 517 532 | 316 | SINE (Alu) | LARS2 | Intron | 2 |
CP068275.2:45 742 852 | 321 | SINE (Alu) | SACM1L | Intron | 2 |
CP068275.2:47 760 449 | 319 | SINE (Alu) | SMARCC1 | Intron | 2 |
CP068275.2:48 737 575 | 325 | SINE (Alu) | IP6K2 | Intron | 2 |
CP068275.2:49 943 579 | 323 | SINE (Alu) | MON1A | Intron | 2 |
CP068275.2:50 054 727 | 266 | SINE (Alu) | RBM6 | Intron | 2 |
CP068275.2:50 341 806 | 95 | Retroposon (SVA) | HYAL1 | Intron | 1 |
CP068275.2:50 871 694 | 344 | SINE (Alu) | DOCK3 | Intron | 2 |
CP068275.2:51 280 052 | 76 | Retroposon (SVA) | DOCK3 | Intron | 1 |
CP068275.2:51 280 097 | 124 | Retroposon (SVA) | DOCK3 | Intron | 1 |
CP068275.2:51 618 731 | 135 | SINE (Alu) | RAD54L2 | Intron | 1 |
CP068275.2:57 489 364 | 483 | LTR (ERV1) | DNAH12 | Intron | 1 |
CP068275.2:57 618 834 | 308 | SINE (Alu) | PDE12 | Intron | 2 |
CP068275.2:59 950 161 | 113 | SINE (Alu) | FHIT | Intron | 2 |
CP068275.2:61 714 843 | 176 | Retroposon (SVA) | PTPRG | Intron | 2 |
CP068275.2:63 598 884 | 311 | SINE (Alu) | SYNPR | Intron | 2 |
CP068275.2:66 758 056 | 136 | SINE (Alu) | LOC105377142 | Intron | 1 |
CP068275.2:66 961 938 | 131 | LINE (L1) | LOC105377144 | Intron | 1 |
CP068275.2:68 464 026 | 50 | LTR (ERV1) | TAFA1 | Intron | 2 |
CP068275.2:68 858 645 | 274 | SINE (Alu) | TAFA4 | Intron | 2 |
CP068275.2:68 878 080 | 290 | SINE (Alu) | TAFA4 | Intron | 2 |
CP068275.2:71 229 921 | 300 | SINE (Alu) | FOXP1 | Intron | 2 |
CP068275.2:78 864 624 | 88 | LINE (L1) | ROBO1 | Intron | 2 |
CP068275.2:80 595 595 | 6 098 | LINE (L1) | LOC105377177 | Intron | 2 |
CP068275.2:82 148 803 | 6 115 | LINE (L1) | LINC02008 | Intron | 2 |
CP068275.2:82 376 966 | 107 | LTR (ERV1) | LINC02008 | Intron | 2 |
CP068275.2:101 546 113 | 225 | Retroposon (SVA) | DCBLD2 | Intron | 1 |
CP068275.2:103 397 456 | 327 | SINE (Alu) | ADGRG7 | Intron | 1 |
CP068275.2:104 176 251 | 320 | SINE (Alu) | SENP7 | Intron | 2 |
CP068275.2:104 197 720 | 134 | SINE (Alu) | SENP7 | Intron | 2 |
CP068275.2:110 894 252 | 325 | SINE (Alu) | IFT57 | Intron | 2 |
CP068275.2:114 228 331 | 327 | SINE (Alu) | LOC105374039 | Intron | 2 |
CP068275.2:114 926 706 | 49 | LINE (L1) | SLC9C1 | Intron | 2 |
CP068275.2:117 366 880 | 320 | SINE (Alu) | ZBTB20 | Intron | 2 |
CP068275.2:125 139 153 | 324 | SINE (Alu) | WDR5B-DT | Intron | 2 |
CP068275.2:125 466 962 | 174 | Retroposon (SVA) | HSPBAP1 | Intron | 1 |
CP068275.2:127 413 483 | 317 | SINE (Alu) | KALRN | Intron | 2 |
CP068275.2:127 593 655 | 324 | SINE (Alu) | ITGB5 | Intron | 2 |
CP068275.2:132 210 422 | 310 | SINE (Alu) | IFT122 | Intron | 2 |
CP068275.2:135 215 089 | 406 | Retroposon (SVA) | DNAJC13 | Intron | 2 |
CP068275.2:135 215 491 | 48 | Retroposon (SVA) | DNAJC13 | Intron | 1 |
CP068275.2:146 290 331 | 107 | SINE (Alu) | SLC9A9 | Intron | 2 |
CP068275.2:148 980 021 | 49 | LTR (ERV1) | PLSCR4 | Intron | 2 |
CP068275.2:151 234 494 | 260 | LINE (L1) | LOC105374150 | Intron | 1 |
CP068275.2:151 234 633 | 260 | LINE (L1) | LOC105374150 | Intron | 1 |
CP068275.2:151 318 626 | 3 976 | LTR (ERVK) | LOC105374150 | Intron | 2 |
CP068275.2:152 131 587 | 97 | Retroposon (SVA) | TM4SF1-AS1 | Intron | 2 |
CP068275.2:152 131 779 | 252 | Retroposon (SVA) | TM4SF1-AS1 | Intron | 2 |
CP068275.2:159 296 741 | 308 | SINE (Alu) | KCNAB1 | Intron | 2 |
CP068275.2:159 953 140 | 73 | Retroposon (SVA) | LOC101928236 | Intron | 2 |
CP068275.2:159 953 717 | 72 | Retroposon (SVA) | LOC101928236 | Intron | 1 |
CP068275.2:175 468 147 | 319 | SINE (Alu) | NCEH1 | Intron | 2 |
CP068275.2:176 823 768 | 688 | LINE (L1) | NLGN1 | Intron | 2 |
CP068275.2:177 480 228 | 322 | SINE (Alu) | NAALADL2 | Intron | 2 |
CP068275.2:180 260 568 | 86 | LTR (ERV1) | LINC00578 | Intron | 1 |
CP068275.2:181 925 312 | 67 | Retroposon (SVA) | PIK3CA-DT | Intron | 2 |
CP068275.2:182 531 561 | 147 | Retroposon (SVA) | USP13 | Intron | 2 |
CP068275.2:182 720 564 | 329 | SINE (Alu) | PEX5L-AS2 | Intron | 2 |
CP068275.2:183 568 171 | 324 | SINE (Alu) | LOC101928882 | Intron | 2 |
CP068275.2:191 982 178 | 322 | SINE (Alu) | TPRG1 | Intron | 2 |
CP068275.2:193 255 336 | 187 | SINE (Alu) | TMEM207 | Intron | 2 |
CP068275.2:198 682 493 | 309 | SINE (Alu) | SDHAP1 | Intron | 2 |
CP068275.2:198 755 196 | 328 | SINE (Alu) | TFRC | Intron | 2 |
CP068275.2:200 460 370 | 71 | SINE (Alu) | RUBCN | Intron | 2 |
CP068276.2:1 142 774 | 278 | SINE (Alu) | SNTG2 | Intron | 2 |
CP068276.2:1 468 423 | 328 | SINE (Alu) | TPO | Intron | 2 |
CP068276.2:2 305 670 | 1 051 | LTR (ERV1) | MYT1L | Intron | 1 |
CP068276.2:3 693 805 | 313 | SINE (Alu) | ALLC | Promoter | 2 |
CP068276.2:3 693 805 | 313 | SINE (Alu) | ALLC | Intron | 2 |
CP068276.2:15 643 219 | 127 | Retroposon (SVA) | DDX1 | Intron | 1 |
CP068276.2:19 661 976 | 317 | SINE (Alu) | LOC124905977 | Intron | 2 |
CP068276.2:24 290 241 | 122 | SINE (Alu) | ITSN2 | Intron | 2 |
CP068276.2:26 286 406 | 329 | SINE (Alu) | HADHB | Intron | 2 |
CP068276.2:28 174 642 | 324 | SINE (Alu) | BABAM2 | Intron | 2 |
CP068276.2:29 627 130 | 318 | SINE (Alu) | ALK | Intron | 2 |
CP068276.2:34 078 377 | 316 | SINE (Alu) | LINC01317 | Intron | 2 |
CP068276.2:40 395 538 | 331 | SINE (Alu) | SLC8A1 | Intron | 2 |
CP068276.2:43 303 089 | 146 | Retroposon (SVA) | THADA | Intron | 2 |
CP068276.2:43 303 395 | 713 | Retroposon (SVA) | THADA | Intron | 2 |
CP068276.2:44 594 092 | 211 | Retroposon (SVA) | CAMKMT | Intron | 2 |
CP068276.2:44 604 010 | 316 | SINE (Alu) | CAMKMT | Intron | 2 |
CP068276.2:48 560 593 | 3 151 | Retroposon (SVA) | STON1-GTF2A1L | Intron | 2 |
CP068276.2:50 018 029 | 132 | SINE (Alu) | NRXN1 | Intron | 2 |
CP068276.2:50 985 182 | 333 | SINE (Alu) | NRXN1 | Intron | 2 |
CP068276.2:51 238 237 | 297 | SINE (Alu) | NRXN1-DT | Intron | 2 |
CP068276.2:51 890 531 | 2 225 | LINE (L1) | NRXN1-DT | Intron | 2 |
CP068276.2:54 094 149 | 324 | SINE (Alu) | ACYP2 | Intron | 2 |
CP068276.2:54 460 543 | 251 | SINE (Alu) | SPTBN1 | Promoter | 2 |
CP068276.2:54 460 543 | 251 | SINE (Alu) | SPTBN1 | Intron | 2 |
CP068276.2:56 143 345 | 317 | SINE (Alu) | LOC105374690 | Intron | 2 |
CP068276.2:62 280 994 | 312 | SINE (Alu) | LOC105374761 | Intron | 2 |
CP068276.2:63 730 038 | 322 | Retroposon (SVA) | WDPCP | Intron | 1 |
CP068276.2:65 116 309 | 305 | SINE (Alu) | RAB1A | Intron | 2 |
CP068276.2:69 529 836 | 322 | SINE (Alu) | AAK1 | Intron | 2 |
CP068276.2:72 253 512 | 6 061 | LINE (L1) | EXOC6B | Intron | 2 |
CP068276.2:74 292 982 | 328 | SINE (Alu) | SLC4A5 | Intron | 2 |
CP068276.2:77 094 493 | 60 | LTR (ERV1) | LRRTM4 | Intron | 1 |
CP068276.2:77 094 493 | 60 | LTR (ERV1) | LRRTM4 | Intron | 1 |
CP068276.2:81 871 469 | 6 015 | LINE (L1) | LOC105374829 | Intron | 2 |
CP068276.2:86 976 073 | 311 | SINE (Alu) | RGPD1 | Intron | 1 |
CP068276.2:87 918 971 | 450 | LINE (L1) | RGPD2 | Intron | 2 |
CP068276.2:102 198 725 | 315 | SINE (Alu) | MAP4K4 | Intron | 2 |
CP068276.2:107 771 785 | 320 | SINE (Alu) | LINC01789 | Intron | 2 |
CP068276.2:111 709 562 | 327 | SINE (Alu) | MIR4435-2HG | Intron | 2 |
CP068276.2:115 501 221 | 316 | SINE (Alu) | DPP10 | Intron | 2 |
CP068276.2:116 195 329 | 4 143 | LINE (L1) | DPP10 | Intron | 2 |
CP068276.2:127 553 905 | 228 | Retroposon (SVA) | LOC105373605 | Intron | 1 |
CP068276.2:128 734 017 | 288 | SINE (Alu) | HS6ST1 | Intron | 2 |
CP068276.2:131 521 066 | 317 | SINE (Alu) | FAM168B | Intron | 2 |
CP068276.2:133 554 578 | 318 | SINE (Alu) | NCKAP5 | Intron | 2 |
CP068276.2:137 933 686 | 324 | SINE (Alu) | THSD7B | Intron | 2 |
CP068276.2:141 222 232 | 325 | SINE (Alu) | LRP1B | Intron | 2 |
CP068276.2:141 752 398 | 57 | LINE (L1) | LRP1B | Intron | 2 |
CP068276.2:142 014 066 | 316 | SINE (Alu) | LRP1B | Intron | 1 |
CP068276.2:148 342 955 | 300 | SINE (Alu) | ACVR2A | Intron | 2 |
CP068276.2:150 220 893 | 319 | SINE (Alu) | MMADHC-DT | Intron | 2 |
CP068276.2:153 756 655 | 320 | SINE (Alu) | GALNT13 | Intron | 2 |
CP068276.2:158 030 254 | 325 | SINE (Alu) | ACVR1C | Intron | 2 |
CP068276.2:158 882 881 | 328 | SINE (Alu) | CCDC148 | Intron | 2 |
CP068276.2:169 073 025 | 328 | SINE (Alu) | CERS6 | Intron | 2 |
CP068276.2:169 505 778 | 323 | SINE (Alu) | ABCB11 | Intron | 2 |
CP068276.2:172 938 241 | 314 | SINE (Alu) | ITGA6 | Intron | 2 |
CP068276.2:175 359 957 | 318 | SINE (Alu) | CHN1 | Intron | 2 |
CP068276.2:177 936 293 | 334 | SINE (Alu) | AGPS | Intron | 1 |
CP068276.2:177 969 024 | 339 | SINE (Alu) | AGPS | Intron | 2 |
CP068276.2:178 294 120 | 216 | LINE (L1) | PDE11A | Intron | 2 |
CP068276.2:181 551 423 | 321 | SINE (Alu) | UBE2E3 | Intron | 2 |
CP068276.2:182 940 163 | 309 | SINE (Alu) | PDE1A | Intron | 2 |
CP068276.2:187 840 214 | 313 | SINE (Alu) | CALCRL-AS1 | Intron | 2 |
CP068276.2:191 887 362 | 476 | Retroposon (SVA) | MYO1B | Intron | 1 |
CP068276.2:192 410 401 | 157 | LTR (ERV1) | CAVIN2-AS1 | Intron | 1 |
CP068276.2:192 619 884 | 241 | LTR (ERV1) | TMEFF2 | Intron | 1 |
CP068276.2:196 356 056 | 275 | SINE (Alu) | DNAH7 | Intron | 2 |
CP068276.2:198 382 303 | 310 | SINE (Alu) | PLCL1 | Intron | 2 |
CP068276.2:198 513 690 | 136 | SINE (Alu) | PLCL1 | Intron | 2 |
CP068276.2:201 680 598 | 334 | SINE (Alu) | CASP10 | Intron | 2 |
CP068276.2:201 765 377 | 3 172 | Retroposon (SVA) | CASP8 | Intron | 2 |
CP068276.2:208 081 694 | 324 | SINE (Alu) | METTL21A | Intron | 2 |
CP068276.2:209 066 826 | 324 | SINE (Alu) | LOC101927960 | Intron | 2 |
CP068276.2:212 323 899 | 315 | SINE (Alu) | ERBB4 | Intron | 2 |
CP068276.2:212 461 340 | 258 | SINE (Alu) | ERBB4 | Intron | 2 |
CP068276.2:214 127 683 | 242 | SINE (Alu) | SPAG16 | Intron | 2 |
CP068276.2:214 395 182 | 306 | SINE (Alu) | SPAG16 | Intron | 2 |
CP068276.2:215 319 682 | 77 | Retroposon (SVA) | SNHG31 | Intron | 2 |
CP068276.2:215 369 785 | 171 | SINE (Alu) | SNHG31 | Intron | 2 |
CP068276.2:216 174 633 | 132 | SINE (Alu) | LOC102724861 | Intron | 1 |
CP068276.2:217 798 533 | 316 | SINE (Alu) | DIRC3-AS1 | Intron | 1 |
CP068276.2:218 962 523 | 296 | SINE (Alu) | USP37 | Intron | 2 |
CP068276.2:220 421 760 | 313 | SINE (Alu) | LOC105373890 | Intron | 1 |
CP068276.2:220 966 361 | 322 | SINE (Alu) | LOC105373893 | Intron | 2 |
CP068276.2:223 381 036 | 2 476 | Retroposon (SVA) | ACSL3 | Intron | 2 |
CP068276.2:223 415 723 | 315 | SINE (Alu) | ACSL3 | Intron | 2 |
CP068276.2:226 370 859 | 317 | SINE (Alu) | LOC105373914 | Intron | 1 |
CP068276.2:227 641 518 | 328 | SINE (Alu) | COL4A4 | Intron | 2 |
CP068276.2:233 687 447 | 149 | SINE (Alu) | INPP5D | Intron | 1 |
CP068276.2:234 212 789 | 50 | Retroposon (SVA) | UGT1A8 | Intron | 2 |
CP068276.2:240 512 571 | 311 | SINE (Alu) | NDUFA10 | Intron | 2 |
CP068277.2:7 919 418 | 309 | SINE (Alu) | RERE | Intron | 2 |
CP068277.2:7 974 800 | 316 | SINE (Alu) | RERE | Intron | 2 |
CP068277.2:17 172 541 | 320 | SINE (Alu) | PADI4 | Intron | 2 |
CP068277.2:20 992 774 | 316 | SINE (Alu) | EIF4G3 | Intron | 2 |
CP068277.2:28 237 649 | 314 | SINE (Alu) | PHACTR4 | Intron | 2 |
CP068277.2:28 260 987 | 318 | SINE (Alu) | PHACTR4 | Intron | 2 |
CP068277.2:28 413 736 | 333 | SINE (Alu) | TRNAU1AP | Intron | 1 |
CP068277.2:28 942 968 | 324 | SINE (Alu) | EPB41 | Intron | 2 |
CP068277.2:38 352 287 | 74 | SINE (Alu) | LOC105378657 | Intron | 2 |
CP068277.2:42 148 108 | 314 | SINE (Alu) | FOXJ3 | Intron | 2 |
CP068277.2:43 262 333 | 324 | SINE (Alu) | SZT2 | Intron | 2 |
CP068277.2:45 201 578 | 325 | SINE (Alu) | MUTYH | Intron | 2 |
CP068277.2:46 090 578 | 333 | SINE (Alu) | LURAP1 | Intron | 2 |
CP068277.2:51 393 792 | 324 | SINE (Alu) | EPS15 | Intron | 2 |
CP068277.2:56 248 449 | 3 850 | LINE (L1) | LOC124905710 | Intron | 2 |
CP068277.2:56 301 172 | 315 | SINE (Alu) | LOC124905710 | Intron | 2 |
CP068277.2:59 284 566 | 318 | SINE (Alu) | FGGY | Intron | 2 |
CP068277.2:64 759 239 | 331 | SINE (Alu) | JAK1 | Intron | 2 |
CP068277.2:69 438 644 | 311 | SINE (Alu) | LOC105378789 | Intron | 2 |
CP068277.2:69 472 604 | 318 | SINE (Alu) | LRRC7 | Intron | 2 |
CP068277.2:74 568 854 | 3 706 | LINE (L1) | CRYZ | Intron | 2 |
CP068277.2:81 683 953 | 323 | SINE (Alu) | ADGRL2 | Intron | 2 |
CP068277.2:85 780 971 | 323 | SINE (Alu) | COL24A1 | Intron | 2 |
CP068277.2:88 493 473 | 313 | SINE (Alu) | PKN2-AS1 | Intron | 2 |
CP068277.2:89 748 218 | 268 | SINE (Alu) | LRRC8D | Intron | 2 |
CP068277.2:97 099 968 | 326 | SINE (Alu) | DPYD-AS1 | Intron | 2 |
CP068277.2:99 773 243 | 143 | SINE (Alu) | LOC124904230 | Intron | 1 |
CP068277.2:99 773 253 | 143 | SINE (Alu) | LOC124904230 | Intron | 1 |
CP068277.2:101 153 840 | 316 | SINE (Alu) | LOC102723784 | Intron | 2 |
CP068277.2:107 637 360 | 308 | SINE (Alu) | VAV3 | Intron | 2 |
CP068277.2:109 210 162 | 78 | Retroposon (SVA) | ELAPOR1 | Intron | 2 |
CP068277.2:109 725 939 | 288 | SINE (Alu) | GSTM5 | Intron | 1 |
CP068277.2:111 310 370 | 61 | LINE (L1) | CHIA | Intron | 2 |
CP068277.2:111 595 921 | 319 | SINE (Alu) | RAP1A | Intron | 2 |
CP068277.2:114 512 654 | 311 | SINE (Alu) | TRIM33 | Intron | 2 |
CP068277.2:114 670 214 | 303 | SINE (Alu) | DENND2C | Intron | 2 |
CP068277.2:117 439 865 | 79 | Retroposon (SVA) | MAN1A2 | Intron | 2 |
CP068277.2:120 472 299 | 321 | SINE (Alu) | NBPF8 | Intron | 2 |
CP068277.2:147 616 749 | 173 | LINE (L1) | FMO5 | Intron | 2 |
CP068277.2:147 621 768 | 315 | SINE (Alu) | FMO5 | Intron | 2 |
CP068277.2:149 352 606 | 291 | SINE (Alu) | ANP32E | Intron | 2 |
CP068277.2:149 536 325 | 328 | SINE (Alu) | RPRD2 | Intron | 2 |
CP068277.2:152 298 029 | 256 | LINE (L1) | SPRR2G | Intron | 2 |
CP068277.2:155 092 710 | 319 | SINE (Alu) | ARHGEF2 | Intron | 2 |
CP068277.2:160 560 541 | 375 | Retroposon (SVA) | TRE-TTC4-2 | Promoter | 1 |
CP068277.2:161 213 049 | 329 | SINE (Alu) | ATF6 | Intron | 2 |
CP068277.2:165 036 498 | 272 | SINE (Alu) | ALDH9A1 | Intron | 2 |
CP068277.2:167 240 949 | 286 | SINE (Alu) | DCAF6 | Intron | 2 |
CP068277.2:168 612 295 | 126 | LINE (L1) | NME7 | Intron | 1 |
CP068277.2:173 333 814 | 324 | SINE (Alu) | RC3H1 | Intron | 2 |
CP068277.2:181 662 904 | 47 | Retroposon (SVA) | LINC01344 | Intron | 1 |
CP068277.2:184 970 319 | 316 | SINE (Alu) | LOC107985239 | Intron | 2 |
CP068277.2:188 371 799 | 328 | SINE (Alu) | LINC01035 | Intron | 1 |
CP068277.2:203 640 459 | 325 | SINE (Alu) | PLEKHA6 | Intron | 1 |
CP068277.2:209 973 608 | 334 | SINE (Alu) | LOC105372901 | Intron | 2 |
CP068277.2:209 987 115 | 121 | SINE (Alu) | LOC105372901 | Intron | 2 |
CP068277.2:210 357 652 | 118 | Retroposon (SVA) | KCNH1 | Intron | 2 |
CP068277.2:211 543 946 | 1 484 | Retroposon (SVA) | PPP2R5A | Intron | 1 |
CP068277.2:211 713 734 | 83 | SINE (Alu) | LINC02771 | Intron | 2 |
CP068277.2:211 837 439 | 316 | SINE (Alu) | ATF3 | Intron | 2 |
CP068277.2:214 261 398 | 53 | LTR (ERVL) | KCNK2 | Intron | 2 |
CP068277.2:216 822 048 | 302 | SINE (Alu) | GPATCH2 | Intron | 2 |
CP068277.2:216 981 237 | 328 | SINE (Alu) | SPATA17 | Intron | 2 |
CP068277.2:216 985 245 | 311 | SINE (Alu) | SPATA17 | Intron | 2 |
CP068277.2:217 249 968 | 6 098 | LINE (L1) | LOC105372922 | Intron | 2 |
CP068277.2:218 986 191 | 316 | SINE (Alu) | LOC105372926 | Intron | 2 |
CP068277.2:220 020 709 | 317 | SINE (Alu) | MTARC2 | Intron | 2 |
CP068277.2:221 722 308 | 173 | Retroposon (SVA) | LOC124905750 | Intron | 1 |
CP068277.2:221 722 389 | 175 | Retroposon (SVA) | LOC124905750 | Intron | 1 |
CP068277.2:221 931 096 | 331 | SINE (Alu) | AIDA | Intron | 2 |
CP068277.2:222 913 578 | 328 | SINE (Alu) | CAPN2 | Intron | 2 |
CP068277.2:223 310 757 | 85 | SINE (Alu) | FBXO28 | Intron | 2 |
CP068277.2:226 463 590 | 323 | SINE (Alu) | CDC42BPA | Intron | 2 |
CP068277.2:226 503 108 | 142 | SINE (Alu) | CDC42BPA | Intron | 2 |
CP068277.2:230 329 881 | 304 | SINE (Alu) | TTC13 | Intron | 2 |
CP068277.2:234 701 085 | 85 | Retroposon (SVA) | ARID4B | Intron | 2 |
CP068277.2:235 287 889 | 334 | SINE (Alu) | LOC105373215 | Promoter | 2 |
CP068277.2:235 831 713 | 323 | SINE (Alu) | EDARADD | Intron | 2 |
CP068277.2:236 817 294 | 313 | SINE (Alu) | RYR2 | Intron | 2 |
CP068277.2:237 215 622 | 307 | SINE (Alu) | RYR2 | Intron | 2 |
CP068277.2:239 055 414 | 281 | LINE (L1) | CHRM3 | Intron | 2 |
CP068277.2:240 478 980 | 330 | SINE (Alu) | RGS7 | Intron | 2 |
CP068277.2:242 577 599 | 317 | SINE (Alu) | CEP170 | Intron | 2 |
CP068277.2:245 785 375 | 137 | Retroposon (SVA) | SMYD3 | Intron | 2 |
CP068277.2:246 075 796 | 265 | SINE (Alu) | CNST | Intron | 2 |
Position | Length | Type | Gene | Annotation | Occurrences |
|---|---|---|---|---|---|
CP068258.2:55 000 772 | 56 | DNA (hAT) | TSHZ2 | Intron | 2 |
CP068268.2:29 625 326 | 54 | DNA (TcMar) | SVIL | Intron | 2 |
CP068275.2:10 649 719 | 82 | DNA (hAT) | ATP2B2 | Intron | 1 |
CP068277.2:168 313 067 | 106 | DNA (hAT) | LINC00970 | Intron | 2 |
CP068277.2:239 923 757 | 176 | DNA (hAT) | GREM2 | Intron | 2 |
It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.
Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.
This section shows the result of enrichment analysis on the genes affected with TE insertions.
Barplot for enriched categories. Values on top have lower p values.
The category with lowest p value is Pyrin domain binding (3.016674e-11), and the highest (among the lowest 10) is cytoskeletal motor activity (0.00730683). The ratio is 242214778.11, i.e., they differ in 8 orders of magnitude.
ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | Count | GeneRatioCalc |
|---|---|---|---|---|---|---|---|---|
GO:0032090 | Pyrin domain binding | 10/746 | 11/20758 | 3.608e-14 | 3.017e-11 | 2.742e-11 | 10 | 0.0134 |
GO:0032395 | MHC class II receptor activity | 16/746 | 67/20758 | 1.34e-09 | 5.602e-07 | 5.092e-07 | 16 | 0.02145 |
GO:0042609 | CD4 receptor binding | 7/746 | 13/20758 | 1.069e-07 | 2.98e-05 | 2.709e-05 | 7 | 0.009383 |
GO:0023026 | MHC class II protein complex binding | 17/746 | 109/20758 | 3.443e-07 | 7.195e-05 | 6.541e-05 | 17 | 0.02279 |
GO:0023023 | MHC protein complex binding | 17/746 | 126/20758 | 2.758e-06 | 0.0004518 | 0.0004107 | 17 | 0.02279 |
GO:0046703 | natural killer cell lectin-like receptor binding | 8/746 | 27/20758 | 3.242e-06 | 0.0004518 | 0.0004107 | 8 | 0.01072 |
GO:0015020 | glucuronosyltransferase activity | 8/746 | 36/20758 | 3.319e-05 | 0.003963 | 0.003603 | 8 | 0.01072 |
GO:0042605 | peptide antigen binding | 16/746 | 139/20758 | 4.074e-05 | 0.004257 | 0.00387 | 16 | 0.02145 |
GO:0005516 | calmodulin binding | 20/746 | 210/20758 | 7.441e-05 | 0.006912 | 0.006284 | 20 | 0.02681 |
GO:0003774 | cytoskeletal motor activity | 14/746 | 118/20758 | 8.74e-05 | 0.007307 | 0.006643 | 14 | 0.01877 |
GO:0015085 | calcium ion transmembrane transporter activity | 15/746 | 142/20758 | 0.000186 | 0.01414 | 0.01285 | 15 | 0.02011 |
GO:0005216 | ion channel activity | 33/746 | 480/20758 | 0.0003069 | 0.02105 | 0.01913 | 33 | 0.04424 |
GO:0051959 | dynein light intermediate chain binding | 6/746 | 27/20758 | 0.0003273 | 0.02105 | 0.01913 | 6 | 0.008043 |
GO:0008569 | minus-end-directed microtubule motor activity | 5/746 | 19/20758 | 0.0004519 | 0.02698 | 0.02453 | 5 | 0.006702 |
GO:0008194 | UDP-glycosyltransferase activity | 15/746 | 157/20758 | 0.0005516 | 0.03074 | 0.02795 | 15 | 0.02011 |
GO:0005262 | calcium channel activity | 13/746 | 126/20758 | 0.0006141 | 0.03209 | 0.02917 | 13 | 0.01743 |
GO:0005001 | transmembrane receptor protein tyrosine phosphatase activity | 5/746 | 21/20758 | 0.000745 | 0.0346 | 0.03146 | 5 | 0.006702 |
GO:0019198 | transmembrane receptor protein phosphatase activity | 5/746 | 21/20758 | 0.000745 | 0.0346 | 0.03146 | 5 | 0.006702 |
GO:0030165 | PDZ domain binding | 10/746 | 89/20758 | 0.00133 | 0.05596 | 0.05087 | 10 | 0.0134 |
GO:0140303 | intramembrane lipid transporter activity | 7/746 | 47/20758 | 0.001353 | 0.05596 | 0.05087 | 7 | 0.009383 |
GO:0042608 | T cell receptor binding | 6/746 | 35/20758 | 0.001406 | 0.05596 | 0.05087 | 6 | 0.008043 |
GO:0005096 | GTPase activator activity | 22/746 | 304/20758 | 0.001552 | 0.05899 | 0.05363 | 22 | 0.02949 |
GO:0004029 | aldehyde dehydrogenase (NAD+) activity | 4/746 | 15/20758 | 0.001645 | 0.05945 | 0.05405 | 4 | 0.005362 |
GO:0042277 | peptide binding | 30/746 | 468/20758 | 0.001707 | 0.05945 | 0.05405 | 30 | 0.04021 |
GO:0008559 | ABC-type xenobiotic transporter activity | 4/746 | 16/20758 | 0.002132 | 0.06758 | 0.06143 | 4 | 0.005362 |
GO:0022836 | gated channel activity | 25/746 | 372/20758 | 0.002146 | 0.06758 | 0.06143 | 25 | 0.03351 |
GO:0030247 | polysaccharide binding | 6/746 | 38/20758 | 0.002182 | 0.06758 | 0.06143 | 6 | 0.008043 |
GO:0004030 | aldehyde dehydrogenase [NAD(P)+] activity | 4/746 | 17/20758 | 0.002709 | 0.07549 | 0.06863 | 4 | 0.005362 |
GO:0015385 | sodium:proton antiporter activity | 4/746 | 17/20758 | 0.002709 | 0.07549 | 0.06863 | 4 | 0.005362 |
GO:0140327 | flippase activity | 4/746 | 17/20758 | 0.002709 | 0.07549 | 0.06863 | 4 | 0.005362 |
GO:0045499 | chemorepellent activity | 5/746 | 29/20758 | 0.003429 | 0.09247 | 0.08407 | 5 | 0.006702 |
GO:0016758 | hexosyltransferase activity | 16/746 | 210/20758 | 0.003922 | 0.1025 | 0.09315 | 16 | 0.02145 |
GO:0004675 | transmembrane receptor protein serine/threonine kinase activity | 4/746 | 19/20758 | 0.004167 | 0.1038 | 0.0944 | 4 | 0.005362 |
GO:0003777 | microtubule motor activity | 8/746 | 72/20758 | 0.004223 | 0.1038 | 0.0944 | 8 | 0.01072 |
GO:0004791 | thioredoxin-disulfide reductase activity | 3/746 | 10/20758 | 0.004591 | 0.1097 | 0.09968 | 3 | 0.004021 |
GO:0042578 | phosphoric ester hydrolase activity | 25/746 | 396/20758 | 0.004829 | 0.1121 | 0.1019 | 25 | 0.03351 |
GO:0052745 | inositol phosphate phosphatase activity | 4/746 | 20/20758 | 0.005063 | 0.1144 | 0.104 | 4 | 0.005362 |
GO:0046873 | metal ion transmembrane transporter activity | 28/746 | 466/20758 | 0.005816 | 0.128 | 0.1163 | 28 | 0.03753 |
GO:0005154 | epidermal growth factor receptor binding | 5/746 | 33/20758 | 0.00609 | 0.1306 | 0.1187 | 5 | 0.006702 |
GO:0003779 | actin binding | 28/746 | 471/20758 | 0.006692 | 0.1342 | 0.122 | 28 | 0.03753 |
GO:0140828 | metal cation:monoatomic cation antiporter activity | 5/746 | 34/20758 | 0.006933 | 0.1342 | 0.122 | 5 | 0.006702 |
GO:0022839 | ion gated channel activity | 6/746 | 48/20758 | 0.007169 | 0.1342 | 0.122 | 6 | 0.008043 |
GO:0005229 | intracellular calcium activated chloride channel activity | 4/746 | 22/20758 | 0.007221 | 0.1342 | 0.122 | 4 | 0.005362 |
GO:0051139 | metal cation:proton antiporter activity | 4/746 | 22/20758 | 0.007221 | 0.1342 | 0.122 | 4 | 0.005362 |
GO:0061778 | intracellular chloride channel activity | 4/746 | 22/20758 | 0.007221 | 0.1342 | 0.122 | 4 | 0.005362 |
GO:0005085 | guanyl-nucleotide exchange factor activity | 17/746 | 245/20758 | 0.007592 | 0.138 | 0.1254 | 17 | 0.02279 |
GO:0019211 | phosphatase activator activity | 4/746 | 23/20758 | 0.008497 | 0.1511 | 0.1374 | 4 | 0.005362 |
GO:0046030 | inositol trisphosphate phosphatase activity | 3/746 | 13/20758 | 0.0101 | 0.169 | 0.1536 | 3 | 0.004021 |
GO:0047134 | protein-disulfide reductase (NAD(P)) activity | 3/746 | 13/20758 | 0.0101 | 0.169 | 0.1536 | 3 | 0.004021 |
GO:0005548 | phospholipid transporter activity | 7/746 | 67/20758 | 0.01011 | 0.169 | 0.1536 | 7 | 0.009383 |
GO:0005261 | cation channel activity | 22/746 | 360/20758 | 0.01124 | 0.1835 | 0.1668 | 22 | 0.02949 |
GO:0017124 | SH3 domain binding | 11/746 | 139/20758 | 0.01173 | 0.1835 | 0.1668 | 11 | 0.01475 |
GO:0005200 | structural constituent of cytoskeleton | 10/746 | 121/20758 | 0.01196 | 0.1835 | 0.1668 | 10 | 0.0134 |
GO:0000146 | microfilament motor activity | 5/746 | 39/20758 | 0.01239 | 0.1835 | 0.1668 | 5 | 0.006702 |
GO:0052866 | phosphatidylinositol phosphate phosphatase activity | 5/746 | 39/20758 | 0.01239 | 0.1835 | 0.1668 | 5 | 0.006702 |
GO:0070679 | inositol 1,4,5 trisphosphate binding | 3/746 | 14/20758 | 0.01251 | 0.1835 | 0.1668 | 3 | 0.004021 |
GO:0140333 | glycerophospholipid flippase activity | 3/746 | 14/20758 | 0.01251 | 0.1835 | 0.1668 | 3 | 0.004021 |
GO:0008381 | mechanosensitive ion channel activity | 4/746 | 26/20758 | 0.01318 | 0.19 | 0.1727 | 4 | 0.005362 |
GO:0048487 | beta-tubulin binding | 5/746 | 41/20758 | 0.01521 | 0.2087 | 0.1897 | 5 | 0.006702 |
GO:0016668 | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor | 3/746 | 15/20758 | 0.01523 | 0.2087 | 0.1897 | 3 | 0.004021 |
GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity | 3/746 | 15/20758 | 0.01523 | 0.2087 | 0.1897 | 3 | 0.004021 |
GO:0030374 | nuclear receptor coactivator activity | 6/746 | 57/20758 | 0.01618 | 0.2182 | 0.1984 | 6 | 0.008043 |
GO:0005080 | protein kinase C binding | 6/746 | 58/20758 | 0.01752 | 0.2311 | 0.2101 | 6 | 0.008043 |
GO:0015386 | potassium:proton antiporter activity | 3/746 | 16/20758 | 0.01825 | 0.2311 | 0.2101 | 3 | 0.004021 |
GO:0106019 | phosphatidylinositol-4,5-bisphosphate phosphatase activity | 3/746 | 16/20758 | 0.01825 | 0.2311 | 0.2101 | 3 | 0.004021 |
GO:0140328 | floppase activity | 3/746 | 16/20758 | 0.01825 | 0.2311 | 0.2101 | 3 | 0.004021 |
GO:0034593 | phosphatidylinositol bisphosphate phosphatase activity | 4/746 | 29/20758 | 0.01924 | 0.2366 | 0.2151 | 4 | 0.005362 |
GO:0140326 | ATPase-coupled intramembrane lipid transporter activity | 4/746 | 29/20758 | 0.01924 | 0.2366 | 0.2151 | 4 | 0.005362 |
GO:0042562 | hormone binding | 8/746 | 94/20758 | 0.01986 | 0.2376 | 0.216 | 8 | 0.01072 |
GO:0044325 | transmembrane transporter binding | 10/746 | 131/20758 | 0.0199 | 0.2376 | 0.216 | 10 | 0.0134 |
GO:0015298 | solute:cation antiporter activity | 5/746 | 45/20758 | 0.02207 | 0.2599 | 0.2363 | 5 | 0.006702 |
GO:0015297 | antiporter activity | 8/746 | 97/20758 | 0.02351 | 0.2723 | 0.2475 | 8 | 0.01072 |
GO:0016791 | phosphatase activity | 18/746 | 300/20758 | 0.02407 | 0.2723 | 0.2475 | 18 | 0.02413 |
GO:0005217 | intracellular ligand-gated ion channel activity | 4/746 | 31/20758 | 0.0241 | 0.2723 | 0.2475 | 4 | 0.005362 |
GO:0015278 | calcium-release channel activity | 3/746 | 18/20758 | 0.02522 | 0.273 | 0.2481 | 3 | 0.004021 |
GO:0017128 | phospholipid scramblase activity | 3/746 | 18/20758 | 0.02522 | 0.273 | 0.2481 | 3 | 0.004021 |
GO:0030275 | LRR domain binding | 3/746 | 18/20758 | 0.02522 | 0.273 | 0.2481 | 3 | 0.004021 |
GO:0005319 | lipid transporter activity | 12/746 | 176/20758 | 0.02547 | 0.273 | 0.2481 | 12 | 0.01609 |
GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | 5/746 | 47/20758 | 0.02615 | 0.2767 | 0.2515 | 5 | 0.006702 |
GO:0015144 | carbohydrate transmembrane transporter activity | 5/746 | 48/20758 | 0.02835 | 0.2848 | 0.2589 | 5 | 0.006702 |
GO:0042169 | SH2 domain binding | 5/746 | 48/20758 | 0.02835 | 0.2848 | 0.2589 | 5 | 0.006702 |
GO:0004115 | 3',5'-cyclic-AMP phosphodiesterase activity | 3/746 | 19/20758 | 0.02916 | 0.2848 | 0.2589 | 3 | 0.004021 |
GO:0030246 | carbohydrate binding | 18/746 | 307/20758 | 0.02937 | 0.2848 | 0.2589 | 18 | 0.02413 |
GO:0005451 | monovalent cation:proton antiporter activity | 4/746 | 33/20758 | 0.02964 | 0.2848 | 0.2589 | 4 | 0.005362 |
GO:0015299 | solute:proton antiporter activity | 4/746 | 33/20758 | 0.02964 | 0.2848 | 0.2589 | 4 | 0.005362 |
GO:0030296 | protein tyrosine kinase activator activity | 4/746 | 33/20758 | 0.02964 | 0.2848 | 0.2589 | 4 | 0.005362 |
GO:0042910 | xenobiotic transmembrane transporter activity | 4/746 | 33/20758 | 0.02964 | 0.2848 | 0.2589 | 4 | 0.005362 |
GO:0016798 | hydrolase activity, acting on glycosyl bonds | 10/746 | 142/20758 | 0.03246 | 0.307 | 0.2791 | 10 | 0.0134 |
GO:0001972 | retinoic acid binding | 3/746 | 20/20758 | 0.03342 | 0.307 | 0.2791 | 3 | 0.004021 |
GO:0004653 | polypeptide N-acetylgalactosaminyltransferase activity | 3/746 | 20/20758 | 0.03342 | 0.307 | 0.2791 | 3 | 0.004021 |
GO:0016408 | C-acyltransferase activity | 3/746 | 20/20758 | 0.03342 | 0.307 | 0.2791 | 3 | 0.004021 |
GO:0045296 | cadherin binding | 20/746 | 357/20758 | 0.03416 | 0.3104 | 0.2822 | 20 | 0.02681 |
GO:0016813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines | 3/746 | 21/20758 | 0.03797 | 0.3339 | 0.3035 | 3 | 0.004021 |
GO:0019200 | carbohydrate kinase activity | 3/746 | 21/20758 | 0.03797 | 0.3339 | 0.3035 | 3 | 0.004021 |
GO:0022821 | solute:potassium antiporter activity | 3/746 | 21/20758 | 0.03797 | 0.3339 | 0.3035 | 3 | 0.004021 |
GO:0050661 | NADP binding | 5/746 | 52/20758 | 0.03834 | 0.3339 | 0.3035 | 5 | 0.006702 |
GO:0000993 | RNA polymerase II complex binding | 4/746 | 36/20758 | 0.03924 | 0.3382 | 0.3075 | 4 | 0.005362 |
GO:0140359 | ABC-type transporter activity | 6/746 | 70/20758 | 0.03973 | 0.3389 | 0.3081 | 6 | 0.008043 |
GO:0008376 | acetylgalactosaminyltransferase activity | 4/746 | 37/20758 | 0.04279 | 0.3545 | 0.3223 | 4 | 0.005362 |
GO:0045505 | dynein intermediate chain binding | 4/746 | 37/20758 | 0.04279 | 0.3545 | 0.3223 | 4 | 0.005362 |
These plots show connections among categories:
Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.
Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.
Barplot for enriched categories. Values on top have lower p values.
The category with lowest p value is regulation of T cell mediated immune response to tumor cell (6.891309e-08), and the highest (among the lowest 10) is positive regulation of response to tumor cell (9.16655e-06). The ratio is 133.0161, i.e., they differ in 2 orders of magnitude.
ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | Count | GeneRatioCalc |
|---|---|---|---|---|---|---|---|---|
GO:0002840 | regulation of T cell mediated immune response to tumor cell | 10/729 | 16/21069 | 1.535e-11 | 6.891e-08 | 6.334e-08 | 10 | 0.01372 |
GO:0002842 | positive regulation of T cell mediated immune response to tumor cell | 9/729 | 13/21069 | 4.276e-11 | 9.595e-08 | 8.819e-08 | 9 | 0.01235 |
GO:0050689 | negative regulation of defense response to virus by host | 8/729 | 10/21069 | 8.373e-11 | 1.253e-07 | 1.151e-07 | 8 | 0.01097 |
GO:0002469 | myeloid dendritic cell antigen processing and presentation | 9/729 | 17/21069 | 1.283e-09 | 1.44e-06 | 1.323e-06 | 9 | 0.01235 |
GO:0002424 | T cell mediated immune response to tumor cell | 10/729 | 24/21069 | 2.924e-09 | 2.624e-06 | 2.412e-06 | 10 | 0.01372 |
GO:0002837 | regulation of immune response to tumor cell | 10/729 | 27/21069 | 1.145e-08 | 7.338e-06 | 6.745e-06 | 10 | 0.01372 |
GO:0045655 | regulation of monocyte differentiation | 10/729 | 27/21069 | 1.145e-08 | 7.338e-06 | 6.745e-06 | 10 | 0.01372 |
GO:0030224 | monocyte differentiation | 12/729 | 43/21069 | 1.541e-08 | 8.604e-06 | 7.908e-06 | 12 | 0.01646 |
GO:0002834 | regulation of response to tumor cell | 10/729 | 28/21069 | 1.725e-08 | 8.604e-06 | 7.908e-06 | 10 | 0.01372 |
GO:0002836 | positive regulation of response to tumor cell | 9/729 | 22/21069 | 2.247e-08 | 9.167e-06 | 8.426e-06 | 9 | 0.01235 |
GO:0002839 | positive regulation of immune response to tumor cell | 9/729 | 22/21069 | 2.247e-08 | 9.167e-06 | 8.426e-06 | 9 | 0.01235 |
GO:0002429 | immune response-activating cell surface receptor signaling pathway | 36/729 | 390/21069 | 9.979e-08 | 3.188e-05 | 2.93e-05 | 36 | 0.04938 |
GO:0002757 | immune response-activating signal transduction | 36/729 | 390/21069 | 9.979e-08 | 3.188e-05 | 2.93e-05 | 36 | 0.04938 |
GO:0046598 | positive regulation of viral entry into host cell | 8/729 | 19/21069 | 1.066e-07 | 3.188e-05 | 2.93e-05 | 8 | 0.01097 |
GO:0075294 | positive regulation by symbiont of entry into host | 8/729 | 19/21069 | 1.066e-07 | 3.188e-05 | 2.93e-05 | 8 | 0.01097 |
GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 20/729 | 147/21069 | 1.778e-07 | 4.928e-05 | 4.529e-05 | 20 | 0.02743 |
GO:0050687 | negative regulation of defense response to virus | 10/729 | 35/21069 | 1.938e-07 | 4.928e-05 | 4.529e-05 | 10 | 0.01372 |
GO:0002399 | MHC class II protein complex assembly | 16/729 | 97/21069 | 2.086e-07 | 4.928e-05 | 4.529e-05 | 16 | 0.02195 |
GO:0002503 | peptide antigen assembly with MHC class II protein complex | 16/729 | 97/21069 | 2.086e-07 | 4.928e-05 | 4.529e-05 | 16 | 0.02195 |
GO:0045657 | positive regulation of monocyte differentiation | 7/729 | 15/21069 | 2.913e-07 | 6.537e-05 | 6.009e-05 | 7 | 0.009602 |
GO:0010803 | regulation of tumor necrosis factor-mediated signaling pathway | 14/729 | 78/21069 | 4.1e-07 | 8.761e-05 | 8.053e-05 | 14 | 0.0192 |
GO:0002468 | dendritic cell antigen processing and presentation | 9/729 | 30/21069 | 5.039e-07 | 9.874e-05 | 9.076e-05 | 9 | 0.01235 |
GO:0002495 | antigen processing and presentation of peptide antigen via MHC class II | 17/729 | 116/21069 | 5.06e-07 | 9.874e-05 | 9.076e-05 | 17 | 0.02332 |
GO:0002396 | MHC protein complex assembly | 16/729 | 105/21069 | 6.368e-07 | 0.0001114 | 0.0001024 | 16 | 0.02195 |
GO:0002501 | peptide antigen assembly with MHC protein complex | 16/729 | 105/21069 | 6.368e-07 | 0.0001114 | 0.0001024 | 16 | 0.02195 |
GO:0002504 | antigen processing and presentation of peptide or polysaccharide antigen via MHC class II | 17/729 | 118/21069 | 6.485e-07 | 0.0001114 | 0.0001024 | 17 | 0.02332 |
GO:0002347 | response to tumor cell | 12/729 | 59/21069 | 6.768e-07 | 0.0001114 | 0.0001024 | 12 | 0.01646 |
GO:0050852 | T cell receptor signaling pathway | 22/729 | 189/21069 | 6.949e-07 | 0.0001114 | 0.0001024 | 22 | 0.03018 |
GO:0052695 | cellular glucuronidation | 8/729 | 24/21069 | 8.891e-07 | 0.0001376 | 0.0001265 | 8 | 0.01097 |
GO:0010804 | negative regulation of tumor necrosis factor-mediated signaling pathway | 10/729 | 41/21069 | 9.806e-07 | 0.0001467 | 0.0001348 | 10 | 0.01372 |
GO:2001056 | positive regulation of cysteine-type endopeptidase activity | 20/729 | 166/21069 | 1.284e-06 | 0.0001859 | 0.0001709 | 20 | 0.02743 |
GO:0019886 | antigen processing and presentation of exogenous peptide antigen via MHC class II | 16/729 | 111/21069 | 1.368e-06 | 0.0001919 | 0.0001764 | 16 | 0.02195 |
GO:0002418 | immune response to tumor cell | 10/729 | 43/21069 | 1.575e-06 | 0.0002143 | 0.0001969 | 10 | 0.01372 |
GO:0019835 | cytolysis | 9/729 | 37/21069 | 3.526e-06 | 0.0004654 | 0.0004278 | 9 | 0.01235 |
GO:0002491 | antigen processing and presentation of endogenous peptide antigen via MHC class II | 6/729 | 14/21069 | 3.98e-06 | 0.0005103 | 0.0004691 | 6 | 0.00823 |
GO:0006063 | uronic acid metabolic process | 8/729 | 29/21069 | 4.45e-06 | 0.0005256 | 0.0004831 | 8 | 0.01097 |
GO:0019585 | glucuronate metabolic process | 8/729 | 29/21069 | 4.45e-06 | 0.0005256 | 0.0004831 | 8 | 0.01097 |
GO:1903902 | positive regulation of viral life cycle | 8/729 | 29/21069 | 4.45e-06 | 0.0005256 | 0.0004831 | 8 | 0.01097 |
GO:0002253 | activation of immune response | 38/729 | 500/21069 | 5.436e-06 | 0.0006256 | 0.000575 | 38 | 0.05213 |
GO:0002768 | immune response-regulating cell surface receptor signaling pathway | 36/729 | 470/21069 | 8.063e-06 | 0.0009047 | 0.0008315 | 36 | 0.04938 |
GO:0021756 | striatum development | 7/729 | 24/21069 | 1.193e-05 | 0.001306 | 0.0012 | 7 | 0.009602 |
GO:0050851 | antigen receptor-mediated signaling pathway | 26/729 | 297/21069 | 1.519e-05 | 0.001623 | 0.001492 | 26 | 0.03567 |
GO:0043281 | regulation of cysteine-type endopeptidase activity involved in apoptotic process | 22/729 | 231/21069 | 1.869e-05 | 0.001913 | 0.001758 | 22 | 0.03018 |
GO:0042093 | T-helper cell differentiation | 12/729 | 80/21069 | 1.875e-05 | 0.001913 | 0.001758 | 12 | 0.01646 |
GO:0002294 | CD4-positive, alpha-beta T cell differentiation involved in immune response | 12/729 | 82/21069 | 2.421e-05 | 0.002415 | 0.002219 | 12 | 0.01646 |
GO:0048524 | positive regulation of viral process | 11/729 | 70/21069 | 2.658e-05 | 0.002564 | 0.002357 | 11 | 0.01509 |
GO:0002287 | alpha-beta T cell activation involved in immune response | 12/729 | 83/21069 | 2.742e-05 | 0.002564 | 0.002357 | 12 | 0.01646 |
GO:0002293 | alpha-beta T cell differentiation involved in immune response | 12/729 | 83/21069 | 2.742e-05 | 0.002564 | 0.002357 | 12 | 0.01646 |
GO:0032829 | regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 6/729 | 19/21069 | 3.1e-05 | 0.002758 | 0.002535 | 6 | 0.00823 |
GO:0032831 | positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 6/729 | 19/21069 | 3.1e-05 | 0.002758 | 0.002535 | 6 | 0.00823 |
GO:0010950 | positive regulation of endopeptidase activity | 20/729 | 205/21069 | 3.134e-05 | 0.002758 | 0.002535 | 20 | 0.02743 |
GO:0002381 | immunoglobulin production involved in immunoglobulin-mediated immune response | 17/729 | 157/21069 | 3.246e-05 | 0.002802 | 0.002575 | 17 | 0.02332 |
GO:0043382 | positive regulation of memory T cell differentiation | 6/729 | 21/21069 | 5.843e-05 | 0.004867 | 0.004474 | 6 | 0.00823 |
GO:0021544 | subpallium development | 7/729 | 30/21069 | 5.856e-05 | 0.004867 | 0.004474 | 7 | 0.009602 |
GO:0019884 | antigen processing and presentation of exogenous antigen | 17/729 | 165/21069 | 6.118e-05 | 0.004992 | 0.004588 | 17 | 0.02332 |
GO:0001960 | negative regulation of cytokine-mediated signaling pathway | 13/729 | 105/21069 | 6.832e-05 | 0.005373 | 0.004939 | 13 | 0.01783 |
GO:0046629 | gamma-delta T cell activation | 8/729 | 41/21069 | 6.863e-05 | 0.005373 | 0.004939 | 8 | 0.01097 |
GO:0002292 | T cell differentiation involved in immune response | 12/729 | 91/21069 | 6.944e-05 | 0.005373 | 0.004939 | 12 | 0.01646 |
GO:0002361 | CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation | 6/729 | 22/21069 | 7.8e-05 | 0.005934 | 0.005454 | 6 | 0.00823 |
GO:0051262 | protein tetramerization | 13/729 | 108/21069 | 9.166e-05 | 0.006856 | 0.006302 | 13 | 0.01783 |
GO:0044088 | regulation of vacuole organization | 10/729 | 67/21069 | 9.644e-05 | 0.007064 | 0.006493 | 10 | 0.01372 |
GO:0002478 | antigen processing and presentation of exogenous peptide antigen | 16/729 | 155/21069 | 9.759e-05 | 0.007064 | 0.006493 | 16 | 0.02195 |
GO:0060761 | negative regulation of response to cytokine stimulus | 13/729 | 110/21069 | 0.0001108 | 0.007893 | 0.007255 | 13 | 0.01783 |
GO:0010952 | positive regulation of peptidase activity | 20/729 | 226/21069 | 0.0001228 | 0.00861 | 0.007914 | 20 | 0.02743 |
GO:0043380 | regulation of memory T cell differentiation | 6/729 | 24/21069 | 0.0001326 | 0.009121 | 0.008383 | 6 | 0.00823 |
GO:0007018 | microtubule-based movement | 31/729 | 436/21069 | 0.0001341 | 0.009121 | 0.008383 | 31 | 0.04252 |
GO:0043379 | memory T cell differentiation | 6/729 | 25/21069 | 0.0001694 | 0.01135 | 0.01043 | 6 | 0.00823 |
GO:0043367 | CD4-positive, alpha-beta T cell differentiation | 12/729 | 100/21069 | 0.0001742 | 0.0115 | 0.01057 | 12 | 0.01646 |
GO:2000516 | positive regulation of CD4-positive, alpha-beta T cell activation | 9/729 | 59/21069 | 0.0001806 | 0.01175 | 0.0108 | 9 | 0.01235 |
GO:0006892 | post-Golgi vesicle-mediated transport | 13/729 | 116/21069 | 0.0001903 | 0.01208 | 0.0111 | 13 | 0.01783 |
GO:2000116 | regulation of cysteine-type endopeptidase activity | 22/729 | 270/21069 | 0.0001911 | 0.01208 | 0.0111 | 22 | 0.03018 |
GO:0009595 | detection of biotic stimulus | 9/729 | 60/21069 | 0.000206 | 0.01284 | 0.0118 | 9 | 0.01235 |
GO:0035710 | CD4-positive, alpha-beta T cell activation | 15/729 | 149/21069 | 0.0002107 | 0.01296 | 0.01191 | 15 | 0.02058 |
GO:0090715 | immunological memory formation process | 6/729 | 26/21069 | 0.0002139 | 0.01297 | 0.01192 | 6 | 0.00823 |
GO:0098581 | detection of external biotic stimulus | 8/729 | 48/21069 | 0.000219 | 0.0131 | 0.01205 | 8 | 0.01097 |
GO:2000785 | regulation of autophagosome assembly | 9/729 | 61/21069 | 0.0002343 | 0.01384 | 0.01272 | 9 | 0.01235 |
GO:0098742 | cell-cell adhesion via plasma-membrane adhesion molecules | 23/729 | 293/21069 | 0.0002379 | 0.01387 | 0.01275 | 23 | 0.03155 |
GO:0032088 | negative regulation of NF-kappaB transcription factor activity | 13/729 | 121/21069 | 0.0002898 | 0.01668 | 0.01533 | 13 | 0.01783 |
GO:0098543 | detection of other organism | 7/729 | 39/21069 | 0.0003376 | 0.01914 | 0.0176 | 7 | 0.009602 |
GO:0030900 | forebrain development | 29/729 | 419/21069 | 0.0003413 | 0.01914 | 0.0176 | 29 | 0.03978 |
GO:0022409 | positive regulation of cell-cell adhesion | 32/729 | 481/21069 | 0.000347 | 0.01922 | 0.01767 | 32 | 0.0439 |
GO:0033209 | tumor necrosis factor-mediated signaling pathway | 14/729 | 141/21069 | 0.0003905 | 0.02137 | 0.01965 | 14 | 0.0192 |
GO:0021537 | telencephalon development | 22/729 | 286/21069 | 0.0004257 | 0.0225 | 0.02068 | 22 | 0.03018 |
GO:0007269 | neurotransmitter secretion | 15/729 | 159/21069 | 0.0004262 | 0.0225 | 0.02068 | 15 | 0.02058 |
GO:0099643 | signal release from synapse | 15/729 | 159/21069 | 0.0004262 | 0.0225 | 0.02068 | 15 | 0.02058 |
GO:0010975 | regulation of neuron projection development | 31/729 | 468/21069 | 0.0004592 | 0.02396 | 0.02203 | 31 | 0.04252 |
GO:0045862 | positive regulation of proteolysis | 29/729 | 428/21069 | 0.000482 | 0.02487 | 0.02286 | 29 | 0.03978 |
GO:0090713 | immunological memory process | 6/729 | 30/21069 | 0.0004903 | 0.025 | 0.02298 | 6 | 0.00823 |
GO:0032732 | positive regulation of interleukin-1 production | 12/729 | 112/21069 | 0.0005029 | 0.02536 | 0.02331 | 12 | 0.01646 |
GO:0042088 | T-helper 1 type immune response | 8/729 | 55/21069 | 0.0005713 | 0.028 | 0.02574 | 8 | 0.01097 |
GO:0050691 | regulation of defense response to virus by host | 8/729 | 55/21069 | 0.0005713 | 0.028 | 0.02574 | 8 | 0.01097 |
GO:0032731 | positive regulation of interleukin-1 beta production | 11/729 | 98/21069 | 0.000574 | 0.028 | 0.02574 | 11 | 0.01509 |
GO:0001959 | regulation of cytokine-mediated signaling pathway | 17/729 | 201/21069 | 0.0006492 | 0.031 | 0.02849 | 17 | 0.02332 |
GO:0048002 | antigen processing and presentation of peptide antigen | 17/729 | 201/21069 | 0.0006492 | 0.031 | 0.02849 | 17 | 0.02332 |
GO:0035774 | positive regulation of insulin secretion involved in cellular response to glucose stimulus | 6/729 | 32/21069 | 0.0007055 | 0.03333 | 0.03064 | 6 | 0.00823 |
GO:0046632 | alpha-beta T cell differentiation | 13/729 | 133/21069 | 0.0007229 | 0.03342 | 0.03072 | 13 | 0.01783 |
GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules | 8/729 | 57/21069 | 0.0007297 | 0.03342 | 0.03072 | 8 | 0.01097 |
GO:0097479 | synaptic vesicle localization | 8/729 | 57/21069 | 0.0007297 | 0.03342 | 0.03072 | 8 | 0.01097 |
GO:0098911 | regulation of ventricular cardiac muscle cell action potential | 4/729 | 13/21069 | 0.0007917 | 0.03589 | 0.03299 | 4 | 0.005487 |
GO:0050870 | positive regulation of T cell activation | 26/729 | 380/21069 | 0.0008026 | 0.03602 | 0.03311 | 26 | 0.03567 |
These plots show connections among categories:
Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.
Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.
Barplot for enriched categories. Values on top have lower p values.
The category with lowest p value is clathrin-coated endocytic vesicle membrane (5.820535e-05), and the highest (among the lowest 10) is clathrin-coated vesicle membrane (0.0009372613). The ratio is 16.10267, i.e., they differ in 1 orders of magnitude.
ID | Description | GeneRatio | BgRatio | pvalue | p.adjust | qvalue | Count | GeneRatioCalc |
|---|---|---|---|---|---|---|---|---|
GO:0030669 | clathrin-coated endocytic vesicle membrane | 19/775 | 129/22283 | 1.098e-07 | 5.821e-05 | 4.902e-05 | 19 | 0.02452 |
GO:0042613 | MHC class II protein complex | 16/775 | 98/22283 | 2.603e-07 | 5.983e-05 | 5.038e-05 | 16 | 0.02065 |
GO:0032588 | trans-Golgi network membrane | 21/775 | 166/22283 | 3.386e-07 | 5.983e-05 | 5.038e-05 | 21 | 0.0271 |
GO:0045334 | clathrin-coated endocytic vesicle | 19/775 | 148/22283 | 9.707e-07 | 0.0001286 | 0.0001083 | 19 | 0.02452 |
GO:0005802 | trans-Golgi network | 30/775 | 333/22283 | 2.152e-06 | 0.0002281 | 0.0001921 | 30 | 0.03871 |
GO:0030658 | transport vesicle membrane | 29/775 | 334/22283 | 6.519e-06 | 0.0005758 | 0.0004849 | 29 | 0.03742 |
GO:0071556 | integral component of lumenal side of endoplasmic reticulum membrane | 16/775 | 127/22283 | 8.789e-06 | 0.0005823 | 0.0004903 | 16 | 0.02065 |
GO:0098553 | lumenal side of endoplasmic reticulum membrane | 16/775 | 127/22283 | 8.789e-06 | 0.0005823 | 0.0004903 | 16 | 0.02065 |
GO:0098576 | lumenal side of membrane | 16/775 | 134/22283 | 1.746e-05 | 0.0009373 | 0.0007893 | 16 | 0.02065 |
GO:0030665 | clathrin-coated vesicle membrane | 20/775 | 196/22283 | 1.768e-05 | 0.0009373 | 0.0007893 | 20 | 0.02581 |
GO:0042611 | MHC protein complex | 16/775 | 142/22283 | 3.605e-05 | 0.001737 | 0.001463 | 16 | 0.02065 |
GO:0016010 | dystrophin-associated glycoprotein complex | 6/775 | 20/22283 | 4.429e-05 | 0.001956 | 0.001647 | 6 | 0.007742 |
GO:0016342 | catenin complex | 7/775 | 32/22283 | 9.427e-05 | 0.003843 | 0.003236 | 7 | 0.009032 |
GO:0012507 | ER to Golgi transport vesicle membrane | 16/775 | 155/22283 | 0.000104 | 0.003938 | 0.003316 | 16 | 0.02065 |
GO:0030136 | clathrin-coated vesicle | 23/775 | 279/22283 | 0.0001259 | 0.004448 | 0.003746 | 23 | 0.02968 |
GO:0001772 | immunological synapse | 9/775 | 58/22283 | 0.0001643 | 0.005438 | 0.004579 | 9 | 0.01161 |
GO:0090665 | glycoprotein complex | 6/775 | 25/22283 | 0.0001744 | 0.005438 | 0.004579 | 6 | 0.007742 |
GO:0098791 | Golgi apparatus subcompartment | 33/775 | 484/22283 | 0.0002006 | 0.005905 | 0.004973 | 33 | 0.04258 |
GO:0097060 | synaptic membrane | 29/775 | 408/22283 | 0.0002412 | 0.006729 | 0.005667 | 29 | 0.03742 |
GO:0098984 | neuron to neuron synapse | 27/775 | 383/22283 | 0.000443 | 0.01163 | 0.009794 | 27 | 0.03484 |
GO:0031902 | late endosome membrane | 17/775 | 194/22283 | 0.0004608 | 0.01163 | 0.009794 | 17 | 0.02194 |
GO:0042383 | sarcolemma | 14/775 | 147/22283 | 0.0006283 | 0.01508 | 0.0127 | 14 | 0.01806 |
GO:0005604 | basement membrane | 11/775 | 99/22283 | 0.0006546 | 0.01508 | 0.0127 | 11 | 0.01419 |
GO:0032279 | asymmetric synapse | 25/775 | 357/22283 | 0.000781 | 0.01725 | 0.01452 | 25 | 0.03226 |
GO:0030134 | COPII-coated ER to Golgi transport vesicle | 16/775 | 188/22283 | 0.0009167 | 0.01943 | 0.01637 | 16 | 0.02065 |
GO:0030863 | cortical cytoskeleton | 12/775 | 120/22283 | 0.0009795 | 0.01957 | 0.01648 | 12 | 0.01548 |
GO:0034702 | ion channel complex | 23/775 | 323/22283 | 0.0009968 | 0.01957 | 0.01648 | 23 | 0.02968 |
GO:1990351 | transporter complex | 29/775 | 447/22283 | 0.001043 | 0.01974 | 0.01662 | 29 | 0.03742 |
GO:1990531 | phospholipid-translocating ATPase complex | 4/775 | 14/22283 | 0.0011 | 0.01991 | 0.01677 | 4 | 0.005161 |
GO:0005938 | cell cortex | 23/775 | 326/22283 | 0.001127 | 0.01991 | 0.01677 | 23 | 0.02968 |
GO:0005858 | axonemal dynein complex | 5/775 | 24/22283 | 0.001231 | 0.02105 | 0.01773 | 5 | 0.006452 |
GO:0031256 | leading edge membrane | 16/775 | 196/22283 | 0.001422 | 0.02355 | 0.01983 | 16 | 0.02065 |
GO:0045211 | postsynaptic membrane | 21/775 | 296/22283 | 0.001694 | 0.02721 | 0.02292 | 21 | 0.0271 |
GO:0030662 | coated vesicle membrane | 21/775 | 299/22283 | 0.001915 | 0.0288 | 0.02426 | 21 | 0.0271 |
GO:0030672 | synaptic vesicle membrane | 12/775 | 130/22283 | 0.001956 | 0.0288 | 0.02426 | 12 | 0.01548 |
GO:0099501 | exocytic vesicle membrane | 12/775 | 130/22283 | 0.001956 | 0.0288 | 0.02426 | 12 | 0.01548 |
GO:0098839 | postsynaptic density membrane | 10/775 | 100/22283 | 0.002525 | 0.03617 | 0.03046 | 10 | 0.0129 |
GO:0030176 | integral component of endoplasmic reticulum membrane | 20/775 | 287/22283 | 0.002653 | 0.03701 | 0.03117 | 20 | 0.02581 |
GO:0014069 | postsynaptic density | 23/775 | 351/22283 | 0.00291 | 0.03955 | 0.0333 | 23 | 0.02968 |
GO:0005770 | late endosome | 22/775 | 332/22283 | 0.003102 | 0.04035 | 0.03398 | 22 | 0.02839 |
GO:0099572 | postsynaptic specialization | 24/775 | 374/22283 | 0.003122 | 0.04035 | 0.03398 | 24 | 0.03097 |
GO:0031227 | intrinsic component of endoplasmic reticulum membrane | 20/775 | 295/22283 | 0.003624 | 0.04573 | 0.03851 | 20 | 0.02581 |
GO:0034703 | cation channel complex | 17/775 | 236/22283 | 0.003839 | 0.04732 | 0.03985 | 17 | 0.02194 |
GO:0019897 | extrinsic component of plasma membrane | 14/775 | 180/22283 | 0.004249 | 0.05088 | 0.04284 | 14 | 0.01806 |
GO:0005741 | mitochondrial outer membrane | 16/775 | 219/22283 | 0.00432 | 0.05088 | 0.04284 | 16 | 0.02065 |
GO:0030864 | cortical actin cytoskeleton | 9/775 | 92/22283 | 0.004716 | 0.05434 | 0.04576 | 9 | 0.01161 |
GO:0099634 | postsynaptic specialization membrane | 11/775 | 128/22283 | 0.005124 | 0.05778 | 0.04865 | 11 | 0.01419 |
GO:1990752 | microtubule end | 5/775 | 33/22283 | 0.005313 | 0.05867 | 0.0494 | 5 | 0.006452 |
GO:0031252 | cell leading edge | 27/775 | 457/22283 | 0.005492 | 0.05897 | 0.04966 | 27 | 0.03484 |
GO:0036157 | outer dynein arm | 3/775 | 11/22283 | 0.00561 | 0.05897 | 0.04966 | 3 | 0.003871 |
GO:0034704 | calcium channel complex | 8/775 | 78/22283 | 0.005675 | 0.05897 | 0.04966 | 8 | 0.01032 |
GO:0031968 | organelle outer membrane | 17/775 | 248/22283 | 0.00627 | 0.0639 | 0.05381 | 17 | 0.02194 |
GO:0098978 | glutamatergic synapse | 22/775 | 354/22283 | 0.006556 | 0.06529 | 0.05498 | 22 | 0.02839 |
GO:0030666 | endocytic vesicle membrane | 20/775 | 312/22283 | 0.006684 | 0.06529 | 0.05498 | 20 | 0.02581 |
GO:0019867 | outer membrane | 17/775 | 250/22283 | 0.006775 | 0.06529 | 0.05498 | 17 | 0.02194 |
GO:1902495 | transmembrane transporter complex | 25/775 | 421/22283 | 0.006917 | 0.06547 | 0.05513 | 25 | 0.03226 |
GO:0044224 | juxtaparanode region of axon | 3/775 | 12/22283 | 0.007288 | 0.0666 | 0.05608 | 3 | 0.003871 |
GO:1990454 | L-type voltage-gated calcium channel complex | 3/775 | 12/22283 | 0.007288 | 0.0666 | 0.05608 | 3 | 0.003871 |
GO:0030673 | axolemma | 4/775 | 23/22283 | 0.007588 | 0.06709 | 0.0565 | 4 | 0.005161 |
GO:0098858 | actin-based cell projection | 17/775 | 253/22283 | 0.007596 | 0.06709 | 0.0565 | 17 | 0.02194 |
GO:0032421 | stereocilium bundle | 7/775 | 66/22283 | 0.007875 | 0.06842 | 0.05762 | 7 | 0.009032 |
GO:0032433 | filopodium tip | 4/775 | 24/22283 | 0.008859 | 0.07573 | 0.06377 | 4 | 0.005161 |
GO:0099061 | integral component of postsynaptic density membrane | 6/775 | 53/22283 | 0.009933 | 0.08148 | 0.06861 | 6 | 0.007742 |
GO:0032589 | neuron projection membrane | 7/775 | 69/22283 | 0.009982 | 0.08148 | 0.06861 | 7 | 0.009032 |
GO:0099240 | intrinsic component of synaptic membrane | 13/775 | 179/22283 | 0.009992 | 0.08148 | 0.06861 | 13 | 0.01677 |
GO:0030135 | coated vesicle | 24/775 | 416/22283 | 0.01119 | 0.08985 | 0.07566 | 24 | 0.03097 |
GO:0032154 | cleavage furrow | 6/775 | 56/22283 | 0.01288 | 0.1004 | 0.08451 | 6 | 0.007742 |
GO:0099146 | intrinsic component of postsynaptic density membrane | 6/775 | 56/22283 | 0.01288 | 0.1004 | 0.08451 | 6 | 0.007742 |
GO:0044753 | amphisome | 3/775 | 15/22283 | 0.01395 | 0.1058 | 0.08913 | 3 | 0.003871 |
GO:0032420 | stereocilium | 6/775 | 57/22283 | 0.01398 | 0.1058 | 0.08913 | 6 | 0.007742 |
GO:0099699 | integral component of synaptic membrane | 12/775 | 168/22283 | 0.01468 | 0.1096 | 0.09227 | 12 | 0.01548 |
GO:0016459 | myosin complex | 6/775 | 58/22283 | 0.01515 | 0.1115 | 0.0939 | 6 | 0.007742 |
GO:0070382 | exocytic vesicle | 16/775 | 253/22283 | 0.01603 | 0.1164 | 0.09798 | 16 | 0.02065 |
GO:0034705 | potassium channel complex | 8/775 | 94/22283 | 0.01667 | 0.1194 | 0.1005 | 8 | 0.01032 |
GO:0008021 | synaptic vesicle | 15/775 | 234/22283 | 0.01729 | 0.1222 | 0.1029 | 15 | 0.01935 |
GO:0032153 | cell division site | 7/775 | 78/22283 | 0.01874 | 0.1307 | 0.1101 | 7 | 0.009032 |
GO:0098688 | parallel fiber to Purkinje cell synapse | 3/775 | 17/22283 | 0.0198 | 0.1363 | 0.1148 | 3 | 0.003871 |
GO:0099060 | integral component of postsynaptic specialization membrane | 7/775 | 80/22283 | 0.02125 | 0.1444 | 0.1216 | 7 | 0.009032 |
GO:0044306 | neuron projection terminus | 10/775 | 137/22283 | 0.02153 | 0.1444 | 0.1216 | 10 | 0.0129 |
GO:0043083 | synaptic cleft | 3/775 | 18/22283 | 0.02316 | 0.1534 | 0.1292 | 3 | 0.003871 |
GO:0098562 | cytoplasmic side of membrane | 14/775 | 222/22283 | 0.02375 | 0.155 | 0.1305 | 14 | 0.01806 |
GO:0030055 | cell-substrate junction | 26/775 | 493/22283 | 0.02398 | 0.155 | 0.1305 | 26 | 0.03355 |
GO:0005930 | axoneme | 11/775 | 161/22283 | 0.02538 | 0.1605 | 0.1352 | 11 | 0.01419 |
GO:0098948 | intrinsic component of postsynaptic specialization membrane | 7/775 | 83/22283 | 0.02544 | 0.1605 | 0.1352 | 7 | 0.009032 |
GO:0097014 | ciliary plasm | 11/775 | 162/22283 | 0.02641 | 0.1642 | 0.1382 | 11 | 0.01419 |
GO:0000118 | histone deacetylase complex | 7/775 | 84/22283 | 0.02695 | 0.1642 | 0.1382 | 7 | 0.009032 |
GO:0008076 | voltage-gated potassium channel complex | 7/775 | 84/22283 | 0.02695 | 0.1642 | 0.1382 | 7 | 0.009032 |
GO:0099568 | cytoplasmic region | 17/775 | 294/22283 | 0.02888 | 0.174 | 0.1465 | 17 | 0.02194 |
GO:0090543 | Flemming body | 4/775 | 34/22283 | 0.02945 | 0.1754 | 0.1477 | 4 | 0.005161 |
GO:0030496 | midbody | 13/775 | 209/22283 | 0.03151 | 0.1855 | 0.1562 | 13 | 0.01677 |
GO:0098982 | GABA-ergic synapse | 7/775 | 88/22283 | 0.0336 | 0.1949 | 0.1641 | 7 | 0.009032 |
GO:0032838 | plasma membrane bounded cell projection cytoplasm | 15/775 | 255/22283 | 0.03383 | 0.1949 | 0.1641 | 15 | 0.01935 |
GO:0030175 | filopodium | 9/775 | 128/22283 | 0.03486 | 0.1971 | 0.166 | 9 | 0.01161 |
GO:0032426 | stereocilium tip | 3/775 | 21/22283 | 0.03496 | 0.1971 | 0.166 | 3 | 0.003871 |
GO:0035869 | ciliary transition zone | 6/775 | 71/22283 | 0.03687 | 0.2057 | 0.1732 | 6 | 0.007742 |
GO:0000781 | chromosome, telomeric region | 12/775 | 193/22283 | 0.03788 | 0.2091 | 0.1761 | 12 | 0.01548 |
GO:0030315 | T-tubule | 5/775 | 54/22283 | 0.03916 | 0.214 | 0.1802 | 5 | 0.006452 |
GO:0005912 | adherens junction | 12/775 | 195/22283 | 0.04047 | 0.2189 | 0.1843 | 12 | 0.01548 |
GO:0044304 | main axon | 6/775 | 74/22283 | 0.04378 | 0.228 | 0.192 | 6 | 0.007742 |
GO:0099023 | vesicle tethering complex | 6/775 | 74/22283 | 0.04378 | 0.228 | 0.192 | 6 | 0.007742 |
These plots show connections among categories:
Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.
Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.
Here it is a barplot of most significantly enriched DO categories.
Barplot for enriched categories. Values on top have lower p values.
The most significant category was ‘progressive familial intrahepatic cholestasis’.
No significant results were found in NCG.